Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H06
         (186 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72510-1|CAA96651.1|  572|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z81570-1|CAB04606.1|  749|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p...    25   7.1  
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr...    25   7.1  
AY887910-1|AAX34422.1|  749|Caenorhabditis elegans anion transpo...    25   7.1  
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.      25   7.1  

>Z72510-1|CAA96651.1|  572|Caenorhabditis elegans Hypothetical
           protein F53B7.2 protein.
          Length = 572

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 104 VITMEDTNELPSLEPSLRNVIEQT 175
           VI + D  ELP  EPS+ N I+ T
Sbjct: 59  VIYVPDIQELPECEPSVFNDIQAT 82


>Z81570-1|CAB04606.1|  749|Caenorhabditis elegans Hypothetical
           protein K12G11.1 protein.
          Length = 749

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 15  GTRGNYIILTCMSAYVCAYLQ*NFAKKLNLL*QWKI 122
           GT    + +  +SA +C  LQ  F K  +L+  WK+
Sbjct: 463 GTLLETLPMAALSAIICVALQGMFRKFADLIDLWKV 498


>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
            protein C47D12.1c protein.
          Length = 4053

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = -1

Query: 183  LKDVCSITFLKEGSKDGSSLVSSIVITNLIS*QNFIVNKRKRKHSCTLI 37
            LK +  + F+KE  ++  +L  + +  + IS   F  N+R R+ +  L+
Sbjct: 1245 LKKMMRVYFIKEEGQEEENLTLATIFVSAISKHYFHSNERVREFAIGLM 1293


>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
            C47D12.1b protein.
          Length = 4061

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = -1

Query: 183  LKDVCSITFLKEGSKDGSSLVSSIVITNLIS*QNFIVNKRKRKHSCTLI 37
            LK +  + F+KE  ++  +L  + +  + IS   F  N+R R+ +  L+
Sbjct: 1251 LKKMMRVYFIKEEGQEEENLTLATIFVSAISKHYFHSNERVREFAIGLM 1299


>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
            C47D12.1a protein.
          Length = 4064

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = -1

Query: 183  LKDVCSITFLKEGSKDGSSLVSSIVITNLIS*QNFIVNKRKRKHSCTLI 37
            LK +  + F+KE  ++  +L  + +  + IS   F  N+R R+ +  L+
Sbjct: 1251 LKKMMRVYFIKEEGQEEENLTLATIFVSAISKHYFHSNERVREFAIGLM 1299


>AY887910-1|AAX34422.1|  749|Caenorhabditis elegans anion
           transporter SULP-4 protein.
          Length = 749

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 15  GTRGNYIILTCMSAYVCAYLQ*NFAKKLNLL*QWKI 122
           GT    + +  +SA +C  LQ  F K  +L+  WK+
Sbjct: 463 GTLLETLPMAALSAIICVALQGMFRKFADLIDLWKV 498


>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
          Length = 4064

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = -1

Query: 183  LKDVCSITFLKEGSKDGSSLVSSIVITNLIS*QNFIVNKRKRKHSCTLI 37
            LK +  + F+KE  ++  +L  + +  + IS   F  N+R R+ +  L+
Sbjct: 1251 LKKMMRVYFIKEEGQEEENLTLATIFVSAISKHYFHSNERVREFAIGLM 1299


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,575,545
Number of Sequences: 27780
Number of extensions: 48832
Number of successful extensions: 78
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 219895322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)