Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H06
         (186 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   1.0  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   1.3  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    21   1.3  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   1.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   4.1  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          19   4.1  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    19   5.4  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    19   5.4  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    19   7.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    19   7.2  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 21   RGNYIILTCMSAYVCAYL 74
            RGN I+ TC  A V + L
Sbjct: 1316 RGNKILRTCQKAVVLSML 1333


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 6   GIFGTRGNYIILTCM 50
           G +GTRG  IIL  +
Sbjct: 185 GFYGTRGKKIILDAL 199


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 6   GIFGTRGNYIILTCM 50
           G +GTRG  IIL  +
Sbjct: 185 GFYGTRGKKIILDAL 199


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 6   GIFGTRGNYIILTCM 50
           G +GTRG  IIL  +
Sbjct: 185 GFYGTRGKKIILDAL 199



 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +3

Query: 9   IFGTRGNYIILTCMSAY 59
           IFG +G Y+ L  +  +
Sbjct: 282 IFGYQGTYVNLVIVKVF 298


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 29  LHYINVHECLRLRL 70
           LH ++VH C  LR+
Sbjct: 94  LHELHVHGCKVLRI 107


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 104 VITMEDTNELPSLEP 148
           +IT+  T +LP L P
Sbjct: 92  IITIPPTRKLPPLHP 106


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 158 FLKKVLKMVVH*YLPLL 108
           FL+ +L + +H Y PL+
Sbjct: 127 FLRVLLHLAMHDYPPLV 143


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 158 FLKKVLKMVVH*YLPLL 108
           FL+ +L + +H Y PL+
Sbjct: 95  FLRVLLHLAMHDYPPLV 111


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = -1

Query: 153 KEGSKDGSSLVSSI 112
           K+G+ DG +L+ ++
Sbjct: 219 KDGNADGKTLIEAL 232


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 186 HLKDVCSITFLKEG 145
           H   VCS TF++ G
Sbjct: 176 HKCTVCSKTFIQSG 189


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,430
Number of Sequences: 438
Number of extensions: 574
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 41
effective length of database: 128,385
effective search space used:  2567700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)