Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H05
         (242 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    23   4.3  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    23   7.5  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    22   9.9  
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo...    22   9.9  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 138  CAVLCCAVLHGSAARAVL 85
            CA+  C  LH S  +AVL
Sbjct: 969  CAIKSCRYLHDSMVKAVL 986


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 9/31 (29%), Positives = 12/31 (38%)
 Frame = -1

Query: 179 HTSKLNIKEKQSTAXXXXXXXXCTGPQRAPF 87
           H  K+NIK    ++          GP   PF
Sbjct: 165 HIDKVNIKYPMESSDSSSTEQQLVGPSSKPF 195


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +1

Query: 109 VQHSTTQHSTAVLCFSFIFNFEVC 180
           ++H++ + ST V C +   + +VC
Sbjct: 259 LEHASNRSSTLVFCINVEHSLKVC 282


>SPCC1020.03 |||mitochondrial iron ion
           transporter|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 397

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 125 HSTAQQCSASPLYLISKCAR 184
           +S+A+ C A P +L + C+R
Sbjct: 6   NSSARSCRAMPRFLPTLCSR 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 741,375
Number of Sequences: 5004
Number of extensions: 9995
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)