Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H05
         (242 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0556 + 4390000-4390431                                           27   2.8  
09_06_0116 - 20950649-20951281                                         26   4.9  
01_01_0794 - 6184622-6185317                                           25   6.4  

>11_01_0556 + 4390000-4390431
          Length = 143

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 162 YKGEAEHCCAVLCCAVLHGSAARAVL 85
           Y  EA  CC+VLC  V+  S A  VL
Sbjct: 101 YDDEAGLCCSVLCALVIFLSIAIMVL 126


>09_06_0116 - 20950649-20951281
          Length = 210

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 29  LVIFVMLRNVVVVSRCREVRTARAADPCSTAQHSTAQQC 145
           L++ V++ ++VVVS       A +A   + A+H  A++C
Sbjct: 58  LLLNVIIASIVVVSVQPRRAAAASATAAAAAEHDAAKRC 96


>01_01_0794 - 6184622-6185317
          Length = 231

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
 Frame = -3

Query: 171 EIKYKGEAEHC----CAVLCCAVLHGSAARAVLTSRH 73
           + +Y+G  + C    C++  CAV  G  AR +    H
Sbjct: 128 KFEYRGTGDECDRWECSICLCAVADGEVARQLPRCMH 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,913,777
Number of Sequences: 37544
Number of extensions: 71252
Number of successful extensions: 198
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 14,793,348
effective HSP length: 59
effective length of database: 12,578,252
effective search space used: 264143292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)