Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H05
         (242 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80455-10|AAB37887.2|  395|Caenorhabditis elegans Activated in b...    26   4.1  
U40942-2|AAC47072.2|  201|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z75545-3|CAA99886.1|  922|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>U80455-10|AAB37887.2|  395|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 11 protein.
          Length = 395

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +2

Query: 74  CREVRTARAADPCSTAQHSTAQQCSASPLYLISKCA 181
           C+  +T  A   CS AQ      C  +  Y   +CA
Sbjct: 47  CQPAQTNTAQQSCSCAQAQQPSSCGCAQQYQQQQCA 82


>U40942-2|AAC47072.2|  201|Caenorhabditis elegans Hypothetical
           protein K02E10.6 protein.
          Length = 201

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -3

Query: 198 YRDKNRAHFEIKYKGEA--EHCCAVLCCAV 115
           Y + N   F+I Y+ +   E+CC + CC +
Sbjct: 125 YEEDNMPIFDIIYQCQRYQEYCCGLNCCKI 154


>Z75545-3|CAA99886.1|  922|Caenorhabditis elegans Hypothetical
           protein K10D3.4 protein.
          Length = 922

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 85  KNGARCGPVQHSTTQHSTAVLCFSFIFN 168
           K+GA CGP        ST   C ++ FN
Sbjct: 524 KSGASCGPAVTRWYYDSTTRTCQTYSFN 551


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,240,723
Number of Sequences: 27780
Number of extensions: 62363
Number of successful extensions: 151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)