Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H03
         (232 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    28   0.14 
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    26   0.77 
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit...    25   1.8  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    24   3.1  
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces...    24   3.1  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    24   3.1  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    23   7.2  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    23   7.2  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    23   7.2  
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    22   9.5  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    22   9.5  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    22   9.5  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    22   9.5  
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    22   9.5  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    22   9.5  

>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 28.3 bits (60), Expect = 0.14
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 76  IGHV-HSKSLLNLSCKQIKDFVNGHNYRRQLLAKGQV 183
           I H+ H KS L+    ++   +N HN+R Q L K +V
Sbjct: 64  IAHIDHGKSTLSDCILKLTGVINEHNFRNQFLDKLEV 100


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 142 GHNYRRQLLAKGQVSGHPAATE 207
           G N+RRQLL  G+  G  AA+E
Sbjct: 854 GDNWRRQLLENGKSFGLEAASE 875


>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
           Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 34  MAVRALLILAMVVCIGHVHSKSLLNLSCKQIKDFVNG 144
           MAV   ++  +V+   ++  K LL+  CK + + + G
Sbjct: 91  MAVDQEMLFEIVLASNYLDIKPLLDTGCKTVANMIRG 127


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 58  LAMVVCIGHVHSKSLLNLSCKQIKDFVNGHN 150
           L+++V I   H +S L    K IKDF N H+
Sbjct: 872 LSILVLIVRQHIRSFLPDLFKLIKDFWNPHS 902


>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 348

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 131 ISSTDTIIGDNYW 169
           I+  DT  GDNYW
Sbjct: 229 ITQCDTATGDNYW 241


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 146  CPLTKSLICLHDKFSRDLLWT 84
            CP ++    L  +F RD LW+
Sbjct: 1352 CPGSRQFTVLQSRFQRDHLWS 1372


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 177 TLSQ*LSPIIVSVDEIFDLFA 115
           TL++ LSP I+ VDEI  L +
Sbjct: 545 TLAKKLSPSIIFVDEIDSLLS 565


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 122 CLHDKFSRDLLWTCPIHTTIAK 57
           C  +    DL++TC I  T+ K
Sbjct: 358 CFAENVQGDLIFTCEISLTVLK 379


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 107 TCHANKSKISSTDTIIGDNYWLRVRYQDTLLQ 202
           T H   S+ SS      +N   RVRY +TLL+
Sbjct: 58  TYHMPSSRKSSFSPEYVENLESRVRYLETLLK 89


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 87  DVSNTYDHCQNKKRAYGHCSVV 22
           D  +    C N  R YGH S++
Sbjct: 319 DSPDMITECLNAVRKYGHVSII 340


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 54  YFGNGRMYWTRP 89
           YFG G  YW  P
Sbjct: 712 YFGTGENYWRGP 723


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 124 IKDFVNGHNYRRQLL 168
           I+++VNGH Y +  L
Sbjct: 679 IREYVNGHGYSQHAL 693


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = -2

Query: 96  FTMDVSNTYDHCQNKKRAYGHCSVVC 19
           F + +S   D C      Y  C +VC
Sbjct: 354 FFLPLSGGLDSCSTAVLVYSMCRIVC 379


>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 151 YRRQLLAKGQVSGHP 195
           ++RQ LAKGQ  G P
Sbjct: 237 FQRQKLAKGQKIGQP 251


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 72   YDHCQNKKRAYGHCSVV 22
            Y H QN ++ +G CS V
Sbjct: 1248 YAHSQNAEKIFGICSKV 1264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,037,352
Number of Sequences: 5004
Number of extensions: 17320
Number of successful extensions: 49
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 56
effective length of database: 2,082,254
effective search space used: 41645080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)