Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H03
         (232 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0418 - 3059575-3061279,3061915-3061973,3064270-3064353,306...    29   0.40 
02_05_0263 - 27257150-27259213                                         27   1.6  
07_01_0330 + 2319014-2319532                                           26   4.9  
02_05_0670 - 30764007-30764135,30764404-30764548,30765200-307653...    26   4.9  
06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270...    25   8.6  

>02_01_0418 -
           3059575-3061279,3061915-3061973,3064270-3064353,
           3064395-3064559
          Length = 670

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 74  VLDTSIVNLY*TCHANKSKISSTDTIIGDNYWLRVRYQDTLLQ 202
           + + S  ++  T HA KS  + T   IG+N+W  V  QD  ++
Sbjct: 356 ITENSFSDIAKTLHAFKSSRNLTTLFIGENFWGEVIPQDETIE 398


>02_05_0263 - 27257150-27259213
          Length = 687

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 71  YVLDTSIVNLY*TCHANKSKISS 139
           Y+L+T IVNLY  C A +S +++
Sbjct: 168 YILETCIVNLYTRCGAYQSAVAT 190


>07_01_0330 + 2319014-2319532
          Length = 172

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 7/31 (22%), Positives = 22/31 (70%)
 Frame = +1

Query: 52  LILAMVVCIGHVHSKSLLNLSCKQIKDFVNG 144
           ++  +++    ++ KSLL+++C+++ D ++G
Sbjct: 108 VLFKLILAANFLNIKSLLDMTCQRVADMMSG 138


>02_05_0670 -
           30764007-30764135,30764404-30764548,30765200-30765309,
           30765578-30765761,30765857-30765969,30766242-30766412,
           30766493-30766756,30767537-30767782
          Length = 453

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 70  VCIG-HVHSKSLLNLSCKQIKDFVNGHNY 153
           VC G  +H   L+   C +++DF+  HN+
Sbjct: 327 VCTGVMMHGYGLVKKLCAELQDFMRQHNF 355


>06_03_1067 -
           27326167-27326295,27326572-27326656,27326993-27327033,
           27327274-27327333,27327843-27327962,27328842-27329114,
           27329186-27329257,27329798-27329860,27329957-27330139,
           27330544-27330660,27330734-27332683,27332770-27332907,
           27333003-27333284,27334650-27335522
          Length = 1461

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 33  NGRTRASYFGNGRMYWT 83
           +GR    YFG G MYW+
Sbjct: 798 SGRDINQYFGGGVMYWS 814


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,770,564
Number of Sequences: 37544
Number of extensions: 117492
Number of successful extensions: 226
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 14,793,348
effective HSP length: 55
effective length of database: 12,728,428
effective search space used: 267296988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)