Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_H03
(232 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77659-1|CAB01164.1| 401|Caenorhabditis elegans Hypothetical pr... 28 1.0
AC006655-2|AAF39876.1| 208|Caenorhabditis elegans Hypothetical ... 28 1.0
Z70307-5|CAA94331.1| 209|Caenorhabditis elegans Hypothetical pr... 27 1.4
AF025453-4|ABC48262.1| 905|Caenorhabditis elegans Hypothetical ... 27 2.4
AF025453-3|AAM98053.2| 828|Caenorhabditis elegans Hypothetical ... 27 2.4
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 26 3.1
Z70205-11|CAD44096.1| 409|Caenorhabditis elegans Hypothetical p... 25 7.2
Z70205-10|CAA94122.2| 887|Caenorhabditis elegans Hypothetical p... 25 7.2
Z68003-6|CAD44105.1| 409|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z68003-5|CAA91979.2| 887|Caenorhabditis elegans Hypothetical pr... 25 7.2
AC024859-18|AAK29974.1| 121|Caenorhabditis elegans Hypothetical... 25 7.2
Z49908-5|CAA90096.1| 353|Caenorhabditis elegans Hypothetical pr... 25 9.5
U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine r... 25 9.5
AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine... 25 9.5
>Z77659-1|CAB01164.1| 401|Caenorhabditis elegans Hypothetical
protein F23B12.1 protein.
Length = 401
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 185 DT*PLASNCLL*LCPLTKSLICLHDKFSRDLL 90
D LA NC+ ++K +IC+H S DL+
Sbjct: 217 DAFQLAFNCMPLCAVVSKKIICMHGGISEDLI 248
>AC006655-2|AAF39876.1| 208|Caenorhabditis elegans Hypothetical
protein H10D18.4 protein.
Length = 208
Score = 27.9 bits (59), Expect = 1.0
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = +1
Query: 58 LAMVVCIGHVHSKSLLNLSCKQIKDFVNGHNYRRQLLAKGQV----SGHPAATEMKYMVW 225
+ +C+ + + S V+ HN R +A+G + P+A+ M+ +VW
Sbjct: 1 MKFALCLLAIFGCATAQFSSTAQGQIVDAHNKLRSAIAQGSYVAAGTQEPSASNMRKIVW 60
Query: 226 DE 231
DE
Sbjct: 61 DE 62
>Z70307-5|CAA94331.1| 209|Caenorhabditis elegans Hypothetical
protein C39E9.5 protein.
Length = 209
Score = 27.5 bits (58), Expect = 1.4
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +1
Query: 40 VRALLILAMVVCIGHVHSKSLLNLSCKQIKDFVNGHNYRRQLLAKGQV----SGHPAATE 207
++ L+LA+V C+G H++ + KQ VN HN R +AKG+ + +AT
Sbjct: 1 MQTALVLALV-CVG-AHAQ--FSEGGKQ--SMVNAHNAVRSSIAKGEYVAKGTKKDSATN 54
Query: 208 MKYMVWD 228
M M WD
Sbjct: 55 MLKMKWD 61
>AF025453-4|ABC48262.1| 905|Caenorhabditis elegans Hypothetical
protein C08F1.5b protein.
Length = 905
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 139 NGHNYRRQLLAKGQVSGHPAATEMKYMVWD 228
NGHNY++ + K + +G TE ++ WD
Sbjct: 587 NGHNYKQAAMLKFEKAGGQGITE--FIKWD 614
>AF025453-3|AAM98053.2| 828|Caenorhabditis elegans Hypothetical
protein C08F1.5a protein.
Length = 828
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 139 NGHNYRRQLLAKGQVSGHPAATEMKYMVWD 228
NGHNY++ + K + +G TE ++ WD
Sbjct: 510 NGHNYKQAAMLKFEKAGGQGITE--FIKWD 537
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 170 ASNCLL*LCPLTKSLIC 120
+SNC+L L PL SL+C
Sbjct: 134 SSNCVLLLAPLINSLVC 150
>Z70205-11|CAD44096.1| 409|Caenorhabditis elegans Hypothetical
protein E02H4.3b protein.
Length = 409
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 6 RVRGNIQLNNG-RTRASYFGNGRMYW 80
RV G+I L RT+ +F NGR+ W
Sbjct: 302 RVLGDIPLRMAKRTKTKFFINGRLDW 327
>Z70205-10|CAA94122.2| 887|Caenorhabditis elegans Hypothetical
protein E02H4.3a protein.
Length = 887
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 6 RVRGNIQLNNG-RTRASYFGNGRMYW 80
RV G+I L RT+ +F NGR+ W
Sbjct: 780 RVLGDIPLRMAKRTKTKFFINGRLDW 805
>Z68003-6|CAD44105.1| 409|Caenorhabditis elegans Hypothetical
protein E02H4.3b protein.
Length = 409
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 6 RVRGNIQLNNG-RTRASYFGNGRMYW 80
RV G+I L RT+ +F NGR+ W
Sbjct: 302 RVLGDIPLRMAKRTKTKFFINGRLDW 327
>Z68003-5|CAA91979.2| 887|Caenorhabditis elegans Hypothetical
protein E02H4.3a protein.
Length = 887
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 6 RVRGNIQLNNG-RTRASYFGNGRMYW 80
RV G+I L RT+ +F NGR+ W
Sbjct: 780 RVLGDIPLRMAKRTKTKFFINGRLDW 805
>AC024859-18|AAK29974.1| 121|Caenorhabditis elegans Hypothetical
protein Y71H2AM.5 protein.
Length = 121
Score = 25.0 bits (52), Expect = 7.2
Identities = 8/25 (32%), Positives = 12/25 (48%)
Frame = -3
Query: 116 HDKFSRDLLWTCPIHTTIAKIRSAR 42
H+ +DLLW P ++R R
Sbjct: 40 HESVKKDLLWAAPYDARFPQVRKQR 64
>Z49908-5|CAA90096.1| 353|Caenorhabditis elegans Hypothetical
protein C07E3.5 protein.
Length = 353
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 12 RGNIQLNNGRTRASYFGNGRMY 77
R NI+L + + R YF RMY
Sbjct: 221 RKNIRLTDDQVREEYFNRQRMY 242
>U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine
receptor protein 22 protein.
Length = 434
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +2
Query: 56 FWQWSYVLDTSIVNLY*TCHANKSKISSTDTIIGDNYWLRVRYQDTL 196
F WSY N+ T KSK S D + + + +Y DTL
Sbjct: 177 FGSWSYQAHAISFNVLDTFVPKKSKNSEWDIVSFNATKMTTKYGDTL 223
>AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine
receptor (51.1 kD)(acr-22) protein.
Length = 434
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +2
Query: 56 FWQWSYVLDTSIVNLY*TCHANKSKISSTDTIIGDNYWLRVRYQDTL 196
F WSY N+ T KSK S D + + + +Y DTL
Sbjct: 177 FGSWSYQAHAISFNVLDTFVPKKSKNSEWDIVSFNATKMTTKYGDTL 223
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,783,178
Number of Sequences: 27780
Number of extensions: 101393
Number of successful extensions: 233
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 12,740,198
effective HSP length: 56
effective length of database: 11,184,518
effective search space used: 223690360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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