Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H02
         (337 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    27   0.77 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    24   5.4  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    24   5.4  
SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual         24   7.1  
SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase Cdc2|Sch...    24   7.1  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    24   7.1  

>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 27.1 bits (57), Expect = 0.77
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -3

Query: 113 LFSFLYQN**VNFVQHLRKIKLY--KHN 36
           LFS LY    +NF++ LR  KLY  KHN
Sbjct: 342 LFSILYALYPINFLEFLRDPKLYASKHN 369


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = -1

Query: 259 VPSSATNRRHSAQLALNQNFVRDFSINSSKFSAATPIFFFAFD-ICNFISFFHFYT 95
           +PS   +   S    L  N VRDFS N        P F++  + + +F  F  F T
Sbjct: 346 IPSVLASLNVSVSYGLMMNLVRDFSKN-----LENPNFYYEREYVDSFYDFLQFMT 396


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 144 KKIGVAAENLEELIEKSRTKF 206
           KK+G+   N EEL E+ + KF
Sbjct: 491 KKLGIDKTNPEELTEEEQRKF 511


>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
 Frame = -1

Query: 148 FFFAFDICNFISFF--HFYT 95
           FFF F + NFI FF  H Y+
Sbjct: 77  FFFLFWLLNFILFFRIHLYS 96


>SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase
           Cdc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 235 RHSAQLALNQNFVRDF 188
           R SA+ AL QN++RDF
Sbjct: 281 RISAKRALQQNYLRDF 296


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 223 QLALNQNFVRDFSINSSKFSAATPI 149
           +L LNQN +   S N +++  +TP+
Sbjct: 71  ELPLNQNILDGLSTNFAEYKNSTPL 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,341,358
Number of Sequences: 5004
Number of extensions: 24323
Number of successful extensions: 67
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)