Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H02
         (337 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0289 - 14725832-14726114,14726216-14726298,14726432-147265...    28   2.2  
01_01_0583 - 4321992-4322165,4322261-4322353,4322445-4322828,432...    27   3.8  
05_03_0394 - 13440871-13441098,13441197-13441394,13441491-134415...    27   5.0  
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907...    26   6.6  
06_03_0923 - 25972063-25972840,25973549-25973620,25973711-259737...    26   6.6  
12_02_1026 - 25478462-25479232,25479249-25479821                       26   8.7  
10_08_0002 - 13986969-13989338                                         26   8.7  

>01_03_0289 -
           14725832-14726114,14726216-14726298,14726432-14726545,
           14727830-14728199,14728726-14728856,14728970-14729078,
           14729257-14729378,14729522-14729625,14729849-14729953,
           14730034-14730192,14730336-14730391,14730576-14730627,
           14730725-14731031
          Length = 664

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 44  CTILFFVNVVQSLLINFGIKMKKGYKVTDVKREKKNW 154
           C + FF N   SLL+ +G+ +    K T + R  + +
Sbjct: 324 CKVFFFENHGHSLLLEYGVHVSSIIKCTSLYRHSRRY 360


>01_01_0583 -
           4321992-4322165,4322261-4322353,4322445-4322828,
           4322909-4322993,4323206-4323444,4323542-4323747,
           4324052-4324163
          Length = 430

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 165 ENLEELIEKSRTKFWFNASCAECRLFVAEDGTQVDD 272
           + +  +++   TK W N+ CA   L +  DGT++D+
Sbjct: 121 KKISSVLQHLNTK-WGNSQCARGELMLFPDGTRLDN 155


>05_03_0394 -
           13440871-13441098,13441197-13441394,13441491-13441594,
           13441687-13442551,13442677-13443045,13443372-13443533,
           13443838-13444056,13444138-13444656,13444742-13444819,
           13446041-13446163
          Length = 954

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 92  FGIKMKKGYKVTDVKREKKNWR 157
           FGIK      ++++K++KKNW+
Sbjct: 197 FGIKGSDEIPLSEIKKKKKNWQ 218


>11_06_0395 + 23088737-23088823,23090198-23090346,23090570-23090708,
            23090795-23090889,23090967-23091080,23091674-23091803,
            23091931-23092052,23092889-23093007,23093946-23094034,
            23094072-23094245,23094310-23094616,23094726-23095180,
            23095334-23096315,23096381-23097396,23097757-23097792,
            23098065-23098130
          Length = 1359

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = +2

Query: 56   FFVNVVQSL--LINFGIKMKKGYKVTDVKREKK--NWRSC*KFRRVD*KIAHKVLVQCQL 223
            FFV  + SL  L NF I++K+GY+++ ++        + C  F  V     H+ +++ +L
Sbjct: 900  FFVGRLTSLQELHNFEIQLKEGYRISSLRNLSSICKLQIC-NFENVG---THEEIIEAKL 955

Query: 224  RRMSPVR 244
            R  S +R
Sbjct: 956  RDKSYLR 962


>06_03_0923 -
           25972063-25972840,25973549-25973620,25973711-25973747,
           25973852-25973910,25974011-25974295,25974653-25974954,
           25974986-25975116,25975209-25975296
          Length = 583

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 203 VLVQCQLRRMSPVRGRGWYTG 265
           VL   Q RR  P+RG  +YTG
Sbjct: 42  VLAAAQTRRKDPLRGLRYYTG 62


>12_02_1026 - 25478462-25479232,25479249-25479821
          Length = 447

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 249 RPRTGDILRSWH*TKTLCAI 190
           R   GD++R+WH  + LC I
Sbjct: 428 RMELGDVVRAWHSCEDLCEI 447


>10_08_0002 - 13986969-13989338
          Length = 789

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 144 KKIGVAAENLEELIEKSRTKFWFNASCAECR 236
           KK G    +L E++EK+R KF +    ++CR
Sbjct: 390 KKYGYQTTSLLEILEKNRDKF-YQLLLSDCR 419


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,001,519
Number of Sequences: 37544
Number of extensions: 131875
Number of successful extensions: 329
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)