Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H02
         (337 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   1.3  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   1.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   1.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   3.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   7.0  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    20   9.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   9.2  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 144 KKIGVAAENL-EELIEKSRTKFWFNASCAECR 236
           ++IG+A+    +E IEK  T +WF      C+
Sbjct: 357 QEIGLASLGASDEEIEKLSTIYWFTVEFGLCK 388


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 193 DFSINSSKFSAATPIFFFAFDICNFISFFH 104
           DF  + S ++   PIF    D+ N +S  H
Sbjct: 81  DFGYDISNYTDVHPIFGTISDLDNLVSAAH 110


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 193 DFSINSSKFSAATPIFFFAFDICNFISFFH 104
           DF  + S ++   PIF    D+ N +S  H
Sbjct: 81  DFGYDISNYTDVHPIFGTISDLDNLVSAAH 110


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 135  NAKKKIGVAAENLEELIEKS 194
            NA+ K G+  E + +LIE++
Sbjct: 1901 NARGKDGMTTEEMRKLIERN 1920


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 284  SYLGLPHDTL 313
            SY G+PH TL
Sbjct: 1067 SYYGVPHSTL 1076


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 8/36 (22%), Positives = 19/36 (52%)
 Frame = -1

Query: 256 PSSATNRRHSAQLALNQNFVRDFSINSSKFSAATPI 149
           P + +N+R +  LA  ++  R+F+++        P+
Sbjct: 335 PITQSNKRTAGNLATREHPSRNFTMSEDGMIEVIPL 370


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 114 PFFIFIPKLISKLCTTFTKNKI 49
           PFF  +  L+S +C     NK+
Sbjct: 55  PFFCDMSPLLSLVCADTRLNKL 76


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 41  VCTILFFVNVVQSLLIN 91
           VCT+  F+ +++  L+N
Sbjct: 313 VCTVFVFMALMEYCLVN 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,076
Number of Sequences: 438
Number of extensions: 1716
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)