Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H01
         (165 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    51   2e-08
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    49   7e-08
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    27   0.25 
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1...    23   4.1  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    23   4.1  
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac...    23   5.4  
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|...    23   7.1  
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    23   7.1  
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po...    23   7.1  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 51.2 bits (117), Expect = 2e-08
 Identities = 22/23 (95%), Positives = 22/23 (95%)
 Frame = +2

Query: 95  MRECISVHVGQAGVQIGNACWEL 163
           MRE ISVHVGQAGVQIGNACWEL
Sbjct: 1   MREVISVHVGQAGVQIGNACWEL 23


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 49.2 bits (112), Expect = 7e-08
 Identities = 20/23 (86%), Positives = 21/23 (91%)
 Frame = +2

Query: 95  MRECISVHVGQAGVQIGNACWEL 163
           MRE IS+HVGQAG QIGNACWEL
Sbjct: 1   MREIISIHVGQAGTQIGNACWEL 23


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 27.5 bits (58), Expect = 0.25
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 95  MRECISVHVGQAGVQIGNACW 157
           MRE + +  GQ G Q+G A W
Sbjct: 1   MREIVHIQAGQCGNQVGAAFW 21


>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 484

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 103 VHLCTRWPSRSPDRK 147
           +H    WPSR+P RK
Sbjct: 3   LHDAYHWPSRTPSRK 17


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 43  RLINLFYLHLSSKNSIQNA*VHLC 114
           +L N+F  H  ++  IQ A  H+C
Sbjct: 199 QLCNIFVNHSKAREDIQKAVNHIC 222


>SPBC3H7.15 |hhp1||serine/threonine protein kinase
           Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 148 ISDLDSGLANVYRDALTHFVLSF 80
           ++ +D GLA  YRD  TH  + +
Sbjct: 147 VNIIDFGLAKKYRDHKTHLHIPY 169


>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 55  LFYLHLSSKNSIQNA*VHLCTRWPSRSP 138
           L Y H +++N I    V  C  WP   P
Sbjct: 197 LRYYHKNNRNPIDWKLVQDCAMWPDGYP 224


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 148 ISDLDSGLANVYRDALTH 95
           ++ +D GLA  YRD  TH
Sbjct: 146 VTMIDFGLAKKYRDFKTH 163


>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 46  LINLFYLHLSSKNSIQNA*VHLCTRWPSRSP 138
           L+   Y+    + S QNA   L +RW S+ P
Sbjct: 103 LVGNVYVRFKYEESAQNAIDDLNSRWYSQRP 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 643,486
Number of Sequences: 5004
Number of extensions: 8415
Number of successful extensions: 23
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 35
effective length of database: 2,187,338
effective search space used: 41559422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)