Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_H01
(165 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 54 2e-08
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 54 2e-08
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 50 3e-07
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 48 8e-07
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 31 0.095
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 28 1.2
05_01_0412 - 3248405-3248458,3248533-3248637,3248950-3249078,324... 27 2.0
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 27 2.7
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 27 2.7
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 27 2.7
03_01_0034 + 318432-318825,318902-319851 27 2.7
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 27 2.7
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 27 2.7
02_05_0391 + 28563242-28563302,28563714-28563931,28564563-285646... 26 3.6
07_03_0741 - 21107566-21107838,21107964-21108102,21108189-211084... 25 6.2
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 25 8.3
04_04_1147 + 31261435-31261763,31261915-31262736,31262934-312629... 25 8.3
03_05_0902 + 28643395-28643708,28643830-28643921,28644342-286444... 25 8.3
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 53.6 bits (123), Expect = 2e-08
Identities = 19/23 (82%), Positives = 23/23 (100%)
Frame = +2
Query: 95 MRECISVHVGQAGVQIGNACWEL 163
MRECIS+H+GQAG+Q+GNACWEL
Sbjct: 1 MRECISIHIGQAGIQVGNACWEL 23
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 53.6 bits (123), Expect = 2e-08
Identities = 19/23 (82%), Positives = 23/23 (100%)
Frame = +2
Query: 95 MRECISVHVGQAGVQIGNACWEL 163
MRECIS+H+GQAG+Q+GNACWEL
Sbjct: 1 MRECISIHIGQAGIQVGNACWEL 23
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 49.6 bits (113), Expect = 3e-07
Identities = 18/23 (78%), Positives = 22/23 (95%)
Frame = +2
Query: 95 MRECISVHVGQAGVQIGNACWEL 163
MRE IS+H+GQAG+Q+GNACWEL
Sbjct: 1 MREIISIHIGQAGIQVGNACWEL 23
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 48.4 bits (110), Expect = 8e-07
Identities = 17/23 (73%), Positives = 22/23 (95%)
Frame = +2
Query: 95 MRECISVHVGQAGVQIGNACWEL 163
MRE IS+H+GQAG+Q+GN+CWEL
Sbjct: 1 MREIISIHIGQAGIQVGNSCWEL 23
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 31.5 bits (68), Expect = 0.095
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 77 QKTQYKMRECISVHVGQAGVQIGNACWEL 163
+K + KMRE + + GQ G QIG+ WE+
Sbjct: 175 KKGEEKMREILHIQGGQCGNQIGSKFWEV 203
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 95 MRECISVHVGQAGVQIGNACWEL 163
MRE + + GQ G QIG+ WE+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEV 23
>05_01_0412 -
3248405-3248458,3248533-3248637,3248950-3249078,
3249279-3249353,3249520-3249624,3249714-3249767,
3249970-3250370,3250583-3250694,3250886-3251086,
3251844-3251972
Length = 454
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 98 RECISVHVGQAGVQIGNACWE 160
RE I++ VGQ G QIG W+
Sbjct: 3 REIITIQVGQCGNQIGMEFWK 23
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 95 MRECISVHVGQAGVQIGNACWEL 163
MRE + + GQ G QIG WE+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEV 23
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 95 MRECISVHVGQAGVQIGNACWEL 163
MRE + + GQ G QIG WE+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEV 23
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 95 MRECISVHVGQAGVQIGNACWEL 163
MRE + + GQ G QIG WE+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEV 23
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 95 MRECISVHVGQAGVQIGNACWEL 163
MRE + + GQ G QIG WE+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEV 23
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 95 MRECISVHVGQAGVQIGNACWEL 163
MRE + + GQ G QIG WE+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEV 23
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 95 MRECISVHVGQAGVQIGNACWEL 163
MRE + + GQ G QIG WE+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEV 23
>02_05_0391 +
28563242-28563302,28563714-28563931,28564563-28564637,
28564730-28565264,28565343-28565523,28565586-28565724,
28565826-28566067,28566157-28566322,28566591-28566698
Length = 574
Score = 26.2 bits (55), Expect = 3.6
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = -2
Query: 107 CTHAFCIEFFELKCR 63
C+H+FC++ E +CR
Sbjct: 305 CSHSFCVKCMETQCR 319
>07_03_0741 -
21107566-21107838,21107964-21108102,21108189-21108426,
21108629-21108836,21108945-21109066,21109146-21109271,
21109356-21109774,21109844-21110268
Length = 649
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 157 PAGISDLDSGLANVY 113
PAGI+D D G+ N Y
Sbjct: 21 PAGIADCDEGVGNTY 35
>07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 46 LINLFYLHLSSKNS 87
L+N+FY HLS NS
Sbjct: 1126 LVNIFYKHLSGSNS 1139
>04_04_1147 +
31261435-31261763,31261915-31262736,31262934-31262970,
31262987-31263028,31263092-31263179,31264344-31264486
Length = 486
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 83 TQYKMRECISVHVGQAGVQI 142
T Y R+C VHVG G QI
Sbjct: 105 TVYGCRKCPQVHVGPVGHQI 124
>03_05_0902 +
28643395-28643708,28643830-28643921,28644342-28644443,
28645135-28645185,28645267-28645328,28645664-28645754,
28645911-28645975,28646053-28646247,28646346-28646465,
28646630-28646700,28646839-28647064,28647474-28647524,
28647629-28647857,28648140-28648279,28648527-28648652
Length = 644
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 34 AERRLINLFYLHLSSKNSIQ 93
A+R L+N FY H+ SK Q
Sbjct: 587 AKRNLLNRFYAHVGSKEKKQ 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,238,450
Number of Sequences: 37544
Number of extensions: 54533
Number of successful extensions: 194
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 14,793,348
effective HSP length: 35
effective length of database: 13,479,308
effective search space used: 256106852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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