Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H01
         (165 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   1.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   1.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   1.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    20   3.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    20   3.2  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    20   3.2  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 158 PSRHFRSGLR 129
           P RH+RSGL+
Sbjct: 139 PLRHYRSGLK 148


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 156 QQAFPIWTPA 127
           +QAFP W P+
Sbjct: 237 RQAFPFWLPS 246


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 156 QQAFPIWTPA 127
           +QAFP W P+
Sbjct: 237 RQAFPFWLPS 246


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 22  LTGRAERRLINLFYLHLSSKNSIQ 93
           L GR E+RL+N     LSS N+++
Sbjct: 50  LCGRHEKRLLNEL---LSSYNTLE 70


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 22  LTGRAERRLINLFYLHLSSKNSIQ 93
           L GR E+RL+N     LSS N+++
Sbjct: 50  LCGRHEKRLLNEL---LSSYNTLE 70


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 138 RSEMPAGSC 164
           RSE+P GSC
Sbjct: 93  RSELPWGSC 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,957
Number of Sequences: 438
Number of extensions: 530
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 34
effective length of database: 131,451
effective search space used:  2629020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)