Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_G24
(400 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ... 50 1e-07
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.20
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po... 29 0.35
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 26 1.9
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 25 3.3
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 25 4.3
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 5.7
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 25 5.7
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 24 7.6
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 24 10.0
>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 50.0 bits (114), Expect = 1e-07
Identities = 25/56 (44%), Positives = 34/56 (60%)
Frame = +2
Query: 197 EEHHDIKNARMNRPLSPHLTIYSIQLTSMLSLTHRTTGLILTTYVSALGIGALVLP 364
E + + + R++RP SPHLTIY QLT LS HR TG ++ + A +G LV P
Sbjct: 46 EANSRLASQRVHRPNSPHLTIYEPQLTWYLSSLHRITGCVVAGTLYAFAMGYLVAP 101
>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 29.5 bits (63), Expect = 0.20
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 200 EHHDIKNARMNRPLSPHLTIYSI 268
E IKNA+M P+S HL YSI
Sbjct: 133 ESQRIKNAKMKSPISTHLAKYSI 155
>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 103
Score = 28.7 bits (61), Expect = 0.35
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = +2
Query: 89 VLATLSRFPATLSTVNYAQSAAGVPKITFKNYEP---PKEEHHDIKNARMNRPLSPHLTI 259
+L +LSR +T S Y G+ + K+Y+P P E ++K M P +P
Sbjct: 4 ILKSLSRSYSTTSPRLYVDVVQGLYISSLKSYKPKAVPSETAAEVKEWSM--PSAPTAPK 61
Query: 260 YSIQLTSMLS 289
Y + TS L+
Sbjct: 62 YDVDFTSALN 71
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 26.2 bits (55), Expect = 1.9
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = -3
Query: 89 PTYCPICHN--TTKPWFTLCQILSIVVGFP 6
PT +CH TTKPW L L++ +P
Sbjct: 373 PTSILLCHGNITTKPWIALANNLAVFSLWP 402
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 3.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 116 ATLSTVNYAQSAAGVPKITFKNYE 187
A+ + N +G+P +TF+NYE
Sbjct: 586 ASFESPNAKHEESGMPVVTFRNYE 609
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 25.0 bits (52), Expect = 4.3
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 170 TFKNYEPPKEEHHDIKNARMNRPLSPHLTIYSIQLTSMLSLTHRTTGLIL 319
T PPK + I A+ PL+P + + +T +LTH T +L
Sbjct: 463 TISTVPPPKYLSNSINGAKFLNPLAPWTLVNAPLIT---NLTHETITSLL 509
>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 822
Score = 24.6 bits (51), Expect = 5.7
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 254 TIYSIQLTSMLSLTHRTTGLILTTYVSALGIGALVLPNDISYYMAIV 394
T+Y S+ + + T IL T V LGI + ++ S+ +A++
Sbjct: 350 TVYFSVFNSLFFMYSKLTSKILNTLVGGLGILLTLRGSEGSFTVALI 396
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 24.6 bits (51), Expect = 5.7
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = -3
Query: 95 PEPTYCPICHNTTKPWF 45
P P +C IC + WF
Sbjct: 209 PTPEFCQICEREIQSWF 225
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 24.2 bits (50), Expect = 7.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 222 AFLISWCSSFGGS*FLNVIL 163
+FL S CS FGG F N I+
Sbjct: 15 SFLYSGCSKFGGRLFNNSIV 34
Score = 23.8 bits (49), Expect = 10.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 74 LGNKSVLATLSRFPATLSTVNYAQSAAGVPKIT 172
L N L+ S PAT S + +AGVPK T
Sbjct: 121 LSNNISLSQSSSSPATSSFSDPKAFSAGVPKFT 153
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 23.8 bits (49), Expect = 10.0
Identities = 6/17 (35%), Positives = 12/17 (70%)
Frame = -1
Query: 262 INGEMWRQWPIHSCVLN 212
++ + WR+WP++ LN
Sbjct: 110 VDSDTWRRWPLNITFLN 126
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,663,812
Number of Sequences: 5004
Number of extensions: 30551
Number of successful extensions: 82
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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