Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_G24
(400 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U57877-1|AAB41838.1| 169|Homo sapiens integral membrane protein... 64 2e-10
D49737-1|BAA31998.1| 169|Homo sapiens cytochrome b large subuni... 64 2e-10
CR457102-1|CAG33383.1| 169|Homo sapiens SDHC protein. 64 2e-10
BC066329-1|AAH66329.1| 169|Homo sapiens succinate dehydrogenase... 64 2e-10
BC033626-1|AAH33626.1| 169|Homo sapiens succinate dehydrogenase... 64 2e-10
BC020808-1|AAH20808.1| 169|Homo sapiens succinate dehydrogenase... 64 2e-10
AL592295-2|CAH70271.1| 169|Homo sapiens succinate dehydrogenase... 64 2e-10
AF039594-1|AAC27993.1| 169|Homo sapiens succinate dehydrogenase... 64 2e-10
AB211235-1|BAE46979.1| 150|Homo sapiens succinate dehydrogenase... 46 5e-05
AF081495-1|AAC31940.1| 135|Homo sapiens integral membrane prote... 42 6e-04
AB211234-1|BAE46978.1| 135|Homo sapiens succinate dehydrogenase... 42 6e-04
AB201252-1|BAE46977.1| 116|Homo sapiens succinate dehydrogenase... 38 0.016
Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein. 29 5.7
>U57877-1|AAB41838.1| 169|Homo sapiens integral membrane protein
CII-3 protein.
Length = 169
Score = 63.7 bits (148), Expect = 2e-10
Identities = 29/61 (47%), Positives = 40/61 (65%)
Frame = +2
Query: 215 KNARMNRPLSPHLTIYSIQLTSMLSLTHRTTGLILTTYVSALGIGALVLPNDISYYMAIV 394
KN NRPLSPH+TIYS L +S+ HR TG+ L+ VS G+ AL+LP + Y+ +V
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 103
Query: 395 E 397
+
Sbjct: 104 K 104
>D49737-1|BAA31998.1| 169|Homo sapiens cytochrome b large subunit
of complex II protein.
Length = 169
Score = 63.7 bits (148), Expect = 2e-10
Identities = 29/61 (47%), Positives = 40/61 (65%)
Frame = +2
Query: 215 KNARMNRPLSPHLTIYSIQLTSMLSLTHRTTGLILTTYVSALGIGALVLPNDISYYMAIV 394
KN NRPLSPH+TIYS L +S+ HR TG+ L+ VS G+ AL+LP + Y+ +V
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 103
Query: 395 E 397
+
Sbjct: 104 K 104
>CR457102-1|CAG33383.1| 169|Homo sapiens SDHC protein.
Length = 169
Score = 63.7 bits (148), Expect = 2e-10
Identities = 29/61 (47%), Positives = 40/61 (65%)
Frame = +2
Query: 215 KNARMNRPLSPHLTIYSIQLTSMLSLTHRTTGLILTTYVSALGIGALVLPNDISYYMAIV 394
KN NRPLSPH+TIYS L +S+ HR TG+ L+ VS G+ AL+LP + Y+ +V
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 103
Query: 395 E 397
+
Sbjct: 104 K 104
>BC066329-1|AAH66329.1| 169|Homo sapiens succinate dehydrogenase
complex, subunit C, integral membrane protein, 15kDa
protein.
Length = 169
Score = 63.7 bits (148), Expect = 2e-10
Identities = 29/61 (47%), Positives = 40/61 (65%)
Frame = +2
Query: 215 KNARMNRPLSPHLTIYSIQLTSMLSLTHRTTGLILTTYVSALGIGALVLPNDISYYMAIV 394
KN NRPLSPH+TIYS L +S+ HR TG+ L+ VS G+ AL+LP + Y+ +V
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 103
Query: 395 E 397
+
Sbjct: 104 K 104
>BC033626-1|AAH33626.1| 169|Homo sapiens succinate dehydrogenase
complex, subunit C, integral membrane protein, 15kDa
protein.
Length = 169
Score = 63.7 bits (148), Expect = 2e-10
Identities = 29/61 (47%), Positives = 40/61 (65%)
Frame = +2
Query: 215 KNARMNRPLSPHLTIYSIQLTSMLSLTHRTTGLILTTYVSALGIGALVLPNDISYYMAIV 394
KN NRPLSPH+TIYS L +S+ HR TG+ L+ VS G+ AL+LP + Y+ +V
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 103
Query: 395 E 397
+
Sbjct: 104 K 104
>BC020808-1|AAH20808.1| 169|Homo sapiens succinate dehydrogenase
complex, subunit C, integral membrane protein, 15kDa
protein.
Length = 169
Score = 63.7 bits (148), Expect = 2e-10
Identities = 29/61 (47%), Positives = 40/61 (65%)
Frame = +2
Query: 215 KNARMNRPLSPHLTIYSIQLTSMLSLTHRTTGLILTTYVSALGIGALVLPNDISYYMAIV 394
KN NRPLSPH+TIYS L +S+ HR TG+ L+ VS G+ AL+LP + Y+ +V
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 103
Query: 395 E 397
+
Sbjct: 104 K 104
>AL592295-2|CAH70271.1| 169|Homo sapiens succinate dehydrogenase
complex, subunit C, integral membrane protein, 15kDa
protein.
Length = 169
Score = 63.7 bits (148), Expect = 2e-10
Identities = 29/61 (47%), Positives = 40/61 (65%)
Frame = +2
Query: 215 KNARMNRPLSPHLTIYSIQLTSMLSLTHRTTGLILTTYVSALGIGALVLPNDISYYMAIV 394
KN NRPLSPH+TIYS L +S+ HR TG+ L+ VS G+ AL+LP + Y+ +V
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 103
Query: 395 E 397
+
Sbjct: 104 K 104
>AF039594-1|AAC27993.1| 169|Homo sapiens succinate dehydrogenase
subunit C protein.
Length = 169
Score = 63.7 bits (148), Expect = 2e-10
Identities = 29/61 (47%), Positives = 40/61 (65%)
Frame = +2
Query: 215 KNARMNRPLSPHLTIYSIQLTSMLSLTHRTTGLILTTYVSALGIGALVLPNDISYYMAIV 394
KN NRPLSPH+TIYS L +S+ HR TG+ L+ VS G+ AL+LP + Y+ +V
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 103
Query: 395 E 397
+
Sbjct: 104 K 104
>AB211235-1|BAE46979.1| 150|Homo sapiens succinate dehydrogenase
complex, subunit C delta5 alternative splicing variant
protein.
Length = 150
Score = 46.0 bits (104), Expect = 5e-05
Identities = 21/39 (53%), Positives = 26/39 (66%)
Frame = +2
Query: 215 KNARMNRPLSPHLTIYSIQLTSMLSLTHRTTGLILTTYV 331
KN NRPLSPH+TIYS L +S+ HR TG+ L+ V
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSADV 82
>AF081495-1|AAC31940.1| 135|Homo sapiens integral membrane protein
CII-3b protein.
Length = 135
Score = 42.3 bits (95), Expect = 6e-04
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +2
Query: 242 SPHLTIYSIQLTSMLSLTHRTTGLILTTYVSALGIGALVLPNDISYYMAIVE 397
SP L I + L +S+ HR TG+ L+ VS G+ AL+LP + Y+ +V+
Sbjct: 19 SPQLCIRNWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVK 70
>AB211234-1|BAE46978.1| 135|Homo sapiens succinate dehydrogenase
complex, subunit C delta3 alternative splicing variant
protein.
Length = 135
Score = 42.3 bits (95), Expect = 6e-04
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +2
Query: 242 SPHLTIYSIQLTSMLSLTHRTTGLILTTYVSALGIGALVLPNDISYYMAIVE 397
SP L I + L +S+ HR TG+ L+ VS G+ AL+LP + Y+ +V+
Sbjct: 19 SPQLCIRNWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVK 70
>AB201252-1|BAE46977.1| 116|Homo sapiens succinate dehydrogenase
complex, subunit C delta2+3 alternative splicing varian
protein.
Length = 116
Score = 37.5 bits (83), Expect = 0.016
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +2
Query: 257 IYSIQLTSMLSLTHRTTGLILTTYVSALGIGALVLPNDISYYMAIVE 397
+ S L +S+ HR TG+ L+ VS G+ AL+LP + Y+ +V+
Sbjct: 5 LLSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVK 51
>Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein.
Length = 3570
Score = 29.1 bits (62), Expect = 5.7
Identities = 24/77 (31%), Positives = 33/77 (42%)
Frame = +2
Query: 95 ATLSRFPATLSTVNYAQSAAGVPKITFKNYEPPKEEHHDIKNARMNRPLSPHLTIYSIQL 274
AT S P T +T+ S A K T ++ P NRP P T+ +I
Sbjct: 1686 ATSSSSPRTATTLPVLTSTA--TKSTATSFTPIPSSTLGTTGTSQNRPPHPMATMSTIHP 1743
Query: 275 TSMLSLTHRTTGLILTT 325
+S TH +T +LTT
Sbjct: 1744 SSTPETTHTST--VLTT 1758
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,810,901
Number of Sequences: 237096
Number of extensions: 1162804
Number of successful extensions: 2147
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2142
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2870859500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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