Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G21
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    27   1.3  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    26   2.3  
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...    25   4.1  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    25   5.4  
SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|c...    24   7.1  
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    24   9.4  

>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 256 QRIVYLGIFSVTCFALSAAGRDINSKFAQNNESQGPLQNSC 378
           +R++ +GIFS   F  S + + INSK A+   +Q      C
Sbjct: 254 KRLLSMGIFSEPDFHPSLSRQWINSKIAETKLTQRQFSRCC 294


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -3

Query: 364 MDLEIHYSEQISNLCHGQQHSM 299
           ++L IH +E   + CHGQ +++
Sbjct: 405 LELRIHLAEVFFHCCHGQSYNL 426


>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 175 YNTLYLGNFVYWLYXXXXXXN*KYYFIQRIVYLGIFSVTCFAL 303
           Y T YL   ++W Y         YYF+ RIV++   S  C+ +
Sbjct: 44  YVTRYLN--LFWRYKSL------YYFLMRIVFIASESYICYLM 78


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 354 RFIILSKFRIYVTASSTQCKARYGEYSQINYALY 253
           RFI+L    ++   S+  C +RY  Y +  +  Y
Sbjct: 191 RFILLDSMLLFFIISTFFCLSRYHVYHKAPFTFY 224


>SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 204

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 19 DSHYCYYCLQI 51
          D  YCYYC ++
Sbjct: 14 DKEYCYYCFEV 24


>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 382 RYMSSVMDLEIHYSEQISNLCHG 314
           RY+SS+MD    + +Q+    HG
Sbjct: 255 RYISSLMDQNTQFRDQMVPFLHG 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,522,686
Number of Sequences: 5004
Number of extensions: 28705
Number of successful extensions: 58
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)