Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G19
         (316 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    27   0.89 
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    27   0.89 
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   2.0  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    24   4.7  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    24   4.7  
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   6.3  
SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          24   6.3  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    24   6.3  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    23   8.3  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    23   8.3  

>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 428

 Score = 26.6 bits (56), Expect = 0.89
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 99 CMRRYHRQQRVTRHARQRAGD 37
          C R +HRQ+   RH R   G+
Sbjct: 9  CKRVFHRQEHQVRHIRSHTGE 29


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 26.6 bits (56), Expect = 0.89
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 10  SLREAAAVAISSALPRVPRDALLAVVPPHAEFNQEFLNRVR 132
           +L E A  A++S +   P DA  A+  P+ E N E LN+++
Sbjct: 327 NLLENANEAVNSPVVDAPMDADSALEIPNDEDNGEILNKLK 367


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 157 WYLPVAFARHSQYAHPRFLTPAGLKPQVNTG 249
           W LPV       +  PRFL PA     VN+G
Sbjct: 302 WLLPVFILSLFPHQEPRFLLPAASIFIVNSG 332


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 102 LCMRRYHRQQRVTRHARQRAGD 37
           LC + ++R +  TRH R   G+
Sbjct: 30  LCTKAFYRLEHQTRHIRTHTGE 51


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 25  AAVAISSALPRVPRDALLAVVPPHAEFNQEFLNRVRMNTIAGEQWYLPVAFA 180
           A +    A    P   +L +    A F+QE +NR + +T A + +Y   AF+
Sbjct: 145 AQITSQIASDTAPPVLVLCICAHAARFSQEEVNRFKSSTAASD-YYANQAFS 195


>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 202 PRFLTPAGLKPQVNTG 249
           P +L P G +P VNTG
Sbjct: 44  PEWLRPPGWQPPVNTG 59


>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 28  AVAISSALPRVPRDALLAVVPPHAEFNQEFLNRV 129
           A  I S++   P +  + + PP    +Q FLN++
Sbjct: 432 AEKIFSSIETPPNETAMVIDPPRKGCDQSFLNQL 465


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 244 TGRFNLHRARTLALAFYRSDYD 309
           T RFN  R   L ++F+RS +D
Sbjct: 3   TYRFNYLRFNKLCVSFFRSKFD 24


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 94  HAEFNQEFLNRVRMNTIAGEQWYLPVAFARHSQ 192
           +A+F   +L   R NT     WY   A A HS+
Sbjct: 513 NAQFLMGYLFDTRGNTEQATYWYNEAAKAGHSE 545


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +1

Query: 64  RDALLAVVPPHAEFNQEFLNRVRMNTIAGEQWYLPVAFARHS 189
           R+A +  +PP + +NQ   +     ++  E + L  A  ++S
Sbjct: 855 RNASMLALPPESRYNQNMQSMSDSKSVVIEDYMLMEALKKNS 896


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 812,160
Number of Sequences: 5004
Number of extensions: 12345
Number of successful extensions: 44
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)