Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_G19
(316 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0601 + 4464745-4465010,4465274-4466582 27 2.3
05_05_0023 + 21605803-21605917,21606054-21606148,21606261-216063... 27 3.1
12_01_1114 + 11899808-11900089,11900278-11900451,11901269-11901604 27 4.1
12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-53... 27 4.1
11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-45... 27 4.1
04_04_0449 - 25318322-25318618,25318839-25319234 27 4.1
02_03_0212 - 16460665-16460766,16460971-16461298,16461379-164615... 27 4.1
04_04_0680 - 27217563-27220088 26 7.1
11_06_0344 + 22540436-22540737,22541304-22543545 25 9.4
09_04_0238 + 15947546-15948157,15948444-15948524,15948603-15948707 25 9.4
09_01_0181 - 2644021-2644578 25 9.4
>07_01_0601 + 4464745-4465010,4465274-4466582
Length = 524
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +1
Query: 58 VPRDALLAVVPPHAEFNQEFLNRVRMNTIAGEQWYLPVAFARHSQ 192
VP+D A V PH + N + +R+ ++G++W + H++
Sbjct: 353 VPKDDAAAGVLPHIQLNDDV--PLRIKDLSGKEWAFNYTWKAHTR 395
>05_05_0023 +
21605803-21605917,21606054-21606148,21606261-21606318,
21606458-21606652,21607001-21607080,21607182-21607247,
21607572-21607680,21608161-21608247,21608315-21608393,
21608490-21608622
Length = 338
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +1
Query: 112 EFLNRVRMNTIAGEQWYLPVAFA---RHSQYAHPRF-LTPAGLKPQVN 243
+FL +R +A E + F RH H F L+P G+ PQ+N
Sbjct: 228 KFLYHIRQEMVANEWINIVQPFTPNIRHVGSRHSSFILSPTGMNPQIN 275
>12_01_1114 + 11899808-11900089,11900278-11900451,11901269-11901604
Length = 263
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 138 VHADPIQELLVELCMRRYHRQQRVTRHARQRAGDCHRR-RLA*RPS 4
+ +DPIQEL E + H++ T H R + R RL RP+
Sbjct: 158 IKSDPIQELRKETRESQNHKKTGATAHIRGKHAAAPRSWRLGERPT 203
>12_01_0063 -
535364-536085,536226-536439,536989-537981,538238-538255,
538601-538860,539950-540073,540978-541310,541447-541531,
541683-541768,541843-541941,542041-542180,542717-543043,
543163-543774,543887-543971,543972-544067,544147-544500,
544536-544559,544597-544707,544811-544894,545468-545546,
546122-546279,546412-546528,546622-546780,546857-546939,
547525-547627,549184-549495
Length = 1925
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -2
Query: 150 ARYRVHADPIQELLVELC--MRRYHRQQRVTRH 58
ARY++ DP E + +LC R++ R +RV H
Sbjct: 167 ARYKLQLDPTLEEVKKLCNTCRKFARTERVLFH 199
>11_01_0061 -
456521-457389,457534-457659,458377-459307,459564-459581,
459924-460183,461834-461918,462587-462919,463053-463137,
463289-463374,463455-463556,463656-463795,464332-464658,
464778-465389,465502-465586,465587-465682,465762-466115,
466212-466322,466426-466509,467086-467164,467742-467899,
468034-468150,468240-468398,468475-468557,469098-469200,
470784-471080
Length = 1899
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -2
Query: 150 ARYRVHADPIQELLVELC--MRRYHRQQRVTRH 58
ARY++ DP E + +LC R++ R +RV H
Sbjct: 162 ARYKLQLDPTLEEVKKLCNTCRKFARTERVLFH 194
>04_04_0449 - 25318322-25318618,25318839-25319234
Length = 230
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 13 LREAAAVAISSALPRVPRDALLAVVPP 93
L +AAAVA S A +PR L + PP
Sbjct: 2 LSQAAAVAFSCAAAALPRALALLLAPP 28
>02_03_0212 -
16460665-16460766,16460971-16461298,16461379-16461502,
16461576-16461825,16462185-16462265,16463030-16463114,
16463200-16463321,16463865-16464672,16464775-16465027,
16465998-16466796
Length = 983
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = +1
Query: 7 GSLREAAAVAISSALPRVPRDALLAVVPP 93
GSL+E AA A SSA PR A+ A PP
Sbjct: 110 GSLQEFAAPASSSATRPPPRAAVRADRPP 138
>04_04_0680 - 27217563-27220088
Length = 841
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -2
Query: 123 IQELLVELCMRRYHRQQRV-TRHARQRAGDC 34
I L VELC+ HR RV H +Q G C
Sbjct: 404 IFHLRVELCVVGLHRPHRVGVDHIKQEDGTC 434
>11_06_0344 + 22540436-22540737,22541304-22543545
Length = 847
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -3
Query: 245 VLTCGLRPAGVRNRGCAYCECRANATGRYHCSPAIVFMRTRFRNSWLNSAC 93
V C +RPA R R C CEC + H ++ ++ +N S C
Sbjct: 316 VQRCIIRPARTRRRACD-CECNPCSYQVNHFMFQLLASKSADKNFVTTSCC 365
>09_04_0238 + 15947546-15948157,15948444-15948524,15948603-15948707
Length = 265
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 61 PRDALLAVVPPHAEFNQEFLNRVRMNTIAGEQWYLPVAFA 180
PR A + V P HA F+Q + R+ + ++ ++ YL + A
Sbjct: 148 PRSANVTV-PVHAVFSQPDVTRLVVGELSAQRKYLEIRIA 186
>09_01_0181 - 2644021-2644578
Length = 185
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 233 GLRPAGVRNRGCAYCECRANA 171
GL P G RNR CA CR +A
Sbjct: 164 GLAPEGGRNRACA-VRCRQDA 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,692,589
Number of Sequences: 37544
Number of extensions: 128182
Number of successful extensions: 452
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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