Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_G19
(316 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49135| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 6e-04
SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0) 32 0.11
SB_7447| Best HMM Match : CHGN (HMM E-Value=0) 31 0.20
SB_40564| Best HMM Match : Laminin_EGF (HMM E-Value=3.5e-12) 31 0.26
SB_18330| Best HMM Match : rve (HMM E-Value=1.2e-16) 30 0.45
SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.60
SB_20597| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 0.79
SB_22002| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25) 28 1.4
SB_386| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25) 28 1.4
SB_31638| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.4
SB_13743| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.4
SB_43150| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.8
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.4
SB_8608| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.4
SB_11606| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_49841| Best HMM Match : Extensin_2 (HMM E-Value=0.29) 26 5.6
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0) 26 5.6
SB_35357| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.4
SB_28587| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-25) 26 7.4
SB_28522| Best HMM Match : cNMP_binding (HMM E-Value=1.1e-17) 26 7.4
SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0) 26 7.4
SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015) 26 7.4
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38) 25 9.8
>SB_49135| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 39.5 bits (88), Expect = 6e-04
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +1
Query: 55 RVPRDALLAVVPPHAEFNQEFLNRVRMNTIAGEQWYLPVAFA 180
++P +AL+ + EF FLNR R+N ++G+Q + PV FA
Sbjct: 652 KLPSNALIFLTTLGVEFTVGFLNRCRVNALSGQQVFFPVPFA 693
>SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1101
Score = 31.9 bits (69), Expect = 0.11
Identities = 21/48 (43%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Frame = -3
Query: 257 LNRPVLT--CGLRPAGVRNRG-C----AYCECRANATGRYHCSPAIVF 135
LN P + C P G+ N G C CECRAN TGR S A F
Sbjct: 368 LNHPEICPDCNCFPQGITNNGTCNQTTGQCECRANVTGRQCDSCADTF 415
>SB_7447| Best HMM Match : CHGN (HMM E-Value=0)
Length = 918
Score = 31.1 bits (67), Expect = 0.20
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +1
Query: 103 FNQEFLNRVRMNTIAGEQWYLPVAFARHSQYAHPRFLTPAGLKPQVN 243
F+ FL+R R N G+Q Y P+ F SQ+ P P G K + N
Sbjct: 575 FSAGFLDRCRNNAALGKQVYYPMVF---SQF-DPNITYPGGYKEEYN 617
>SB_40564| Best HMM Match : Laminin_EGF (HMM E-Value=3.5e-12)
Length = 186
Score = 30.7 bits (66), Expect = 0.26
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 233 GLRPAGVRNRGCAYCECRANATGR 162
G PAG N+ C+CRA+ TG+
Sbjct: 159 GTYPAGTCNKATGQCQCRAHVTGK 182
>SB_18330| Best HMM Match : rve (HMM E-Value=1.2e-16)
Length = 997
Score = 29.9 bits (64), Expect = 0.45
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 144 YRVHAD-PIQELLVELCMRRYHRQQRVTRHARQR 46
Y+V D Q+ LVEL RRY RQ R+ R A R
Sbjct: 84 YQVKVDISTQKALVELLKRRYKRQPRLNRDAITR 117
>SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 29.5 bits (63), Expect = 0.60
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -2
Query: 165 QVPLLARYRVHADPIQELLVELCMRRYHRQQRVTRHARQRAG 40
QV R+R D I++ L +C +++ + + RH R G
Sbjct: 774 QVASYCRHRKSHDGIKDYLCNICNKKFTQSNSLVRHMRSHTG 815
>SB_20597| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 268
Score = 29.1 bits (62), Expect = 0.79
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 153 LARYRVHADPIQELLVELCMRRYHRQQRVTRHARQRAGD 37
+ YR HA ++ L E C RR+ + + RH R G+
Sbjct: 122 IQHYRSHAG-VKPYLCETCGRRFTESRDLARHIRSHTGE 159
>SB_22002| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)
Length = 431
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 108 VELCMRRYHRQQRVTRHARQRAG 40
VE C RR+ R +TRH R G
Sbjct: 307 VETCPRRFSRSDELTRHMRTHTG 329
>SB_386| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)
Length = 669
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 108 VELCMRRYHRQQRVTRHARQRAG 40
VE C RR+ R +TRH R G
Sbjct: 545 VETCPRRFSRSDELTRHMRTHTG 567
>SB_31638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1526
Score = 28.3 bits (60), Expect = 1.4
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = +1
Query: 73 LLAVVPPHAEFNQEFLNRVRMNTIAGEQWYLPVAFAR 183
LL +PP A++ + LN +++ +++ + W + A+
Sbjct: 803 LLGSLPPSAQYFNKLLNELQLKSVSNKSWLVAQGVAK 839
>SB_13743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -2
Query: 135 HADPIQELLVELCMRRY-HRQQRVTRHARQRAGDCH 31
HAD ++ L RY H +R RHAR+ A D H
Sbjct: 170 HADTLKTHLQTHMQTRYKHACRRTCRHARRHATDTH 205
Score = 25.4 bits (53), Expect = 9.8
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -2
Query: 135 HADPIQELL-VELCMRRYHRQQRVTRHARQRAGDCH 31
HAD +Q + + R R Q RHAR+ A D H
Sbjct: 23 HADTLQSRMQTHMQSRMQTRTQARYRHARRHATDTH 58
>SB_43150| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 616
Score = 27.9 bits (59), Expect = 1.8
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = +1
Query: 10 SLREAAAVAISSALPRVPRDALLAVVPPHAEFNQEFLNRVRMNTIAGEQWYLPVAFARHS 189
S REA VAI+ L P +L + H E L +R + I G+Q Y PV R
Sbjct: 476 SRREAFNVAIN--LVTDPNSIVL-LTDLHLEMTSLLLKDIRKHCIQGQQVYTPV-IIRQG 531
Query: 190 QYAHPR 207
+ + PR
Sbjct: 532 KCSSPR 537
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Frame = -3
Query: 242 LTCGLRPAGV--RNRGC----AYCECRANATGR 162
+TCG AG RN C C C++N TGR
Sbjct: 557 VTCGCNTAGTVNRNASCDQSRGQCYCKSNVTGR 589
>SB_8608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 160 YLPVAFARHSQYAHPRFLTPAGLKPQVNTGRF 255
YL + FA+ ++ +P+F TP K N G++
Sbjct: 48 YLGIPFAKAERFENPQFPTPWRSKKWFNRGKY 79
>SB_11606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 816
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = +1
Query: 7 GSLREAAAVAISSALPRVPRDALLAVVPPHAEFNQEFLNRVRMNTIAGEQWY 162
G++ E V + + R D L VP H F + RVR + WY
Sbjct: 762 GTVAEERHVTLPYTIQRNVHDRTLRTVPAHKTFRVVYNKRVRRDMRTYLLWY 813
>SB_49841| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
Length = 1841
Score = 26.2 bits (55), Expect = 5.6
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Frame = -3
Query: 248 PVLTCGLRPAGVRNRGC----AYCECRANATGRYHCSPAIVFMRTRFRNSW 108
P L+C +R G C RAN TG +H +P +R + W
Sbjct: 590 PALSCLMRQFNCTTSGWHGTPPCCAIRANTTGGWHGTPPCRAIRASTTSGW 640
>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1449
Score = 26.2 bits (55), Expect = 5.6
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = -2
Query: 141 RVHADPIQELLVELCMRRYHRQQRVTRHARQRAGD 37
RVH + ++C + +H +T+HA++ +G+
Sbjct: 990 RVHHTHERPFQCQICHKSFHMAGDLTKHAKRHSGE 1024
>SB_35357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 84 HRQQRVTRHARQRAGDCHRRRL 19
HRQ V + QR+ D +RRRL
Sbjct: 28 HRQSLVASYQGQRSRDAYRRRL 49
>SB_28587| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-25)
Length = 346
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 153 LARYRVHADPIQELLVELCMRRYHRQQRVTRHARQ 49
LAR++ + LC RR+ R +T+HAR+
Sbjct: 252 LARHKRTHTGEKRFACPLCGRRFMRSDHLTKHARR 286
>SB_28522| Best HMM Match : cNMP_binding (HMM E-Value=1.1e-17)
Length = 380
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 84 HRQQRVTRHARQRAGDCHRRRL 19
HRQ V + QR+ D +RRRL
Sbjct: 218 HRQSLVASYQGQRSRDAYRRRL 239
>SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 376
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -2
Query: 138 VHADPIQELLVELCMRRYHRQQRVTRHARQRAGD 37
+HAD I+ E C +R+H++ + +H G+
Sbjct: 286 IHAD-IRPFSCEFCGKRFHQKSDMKKHTLVHTGE 318
>SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)
Length = 921
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 5 EGRYARRRRWQSPARCLACLVTRCWRWYRR 94
E R RRR + RC AC+ + +R YRR
Sbjct: 345 EKRAKRRRNVGTGRRCKACITVQAYR-YRR 373
>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
Length = 509
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 156 LLARYRVHADPIQELLVELCMRRYHRQQRVTRHARQRAGD 37
L A RVH+ + +C RR+ + VT H R +G+
Sbjct: 414 LKAHLRVHSKE-KPFKCHICHRRFAQSSSVTTHMRIHSGE 452
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,020,167
Number of Sequences: 59808
Number of extensions: 121719
Number of successful extensions: 445
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 400488992
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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