Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_G19
(316 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00025-4|AAN65312.1| 606|Caenorhabditis elegans Hypothetical pr... 45 1e-05
U00025-3|AAA50619.1| 804|Caenorhabditis elegans Hypothetical pr... 45 1e-05
AB110824-1|BAD80739.1| 606|Caenorhabditis elegans chondroitin p... 45 1e-05
AB110823-1|BAD80738.1| 804|Caenorhabditis elegans chondroitin p... 45 1e-05
Z81131-6|CAE17977.2| 734|Caenorhabditis elegans Hypothetical pr... 34 0.019
Z81131-5|CAB03422.2| 608|Caenorhabditis elegans Hypothetical pr... 34 0.019
AY241925-2|AAO85273.1| 734|Caenorhabditis elegans chondroitin d... 34 0.019
AY241925-1|AAO85274.1| 736|Caenorhabditis elegans chondroitin d... 34 0.019
AB088398-1|BAC76781.1| 715|Caenorhabditis elegans chondroitin s... 34 0.019
AB088397-1|BAC76780.1| 726|Caenorhabditis elegans chondroitin s... 34 0.019
Z30215-4|CAA82936.1| 541|Caenorhabditis elegans Hypothetical pr... 28 1.2
AY313178-1|AAP79303.1| 569|Caenorhabditis elegans myotubularin-... 27 2.1
AC024770-4|AAT68891.1| 521|Caenorhabditis elegans Mtm (myotubul... 27 2.1
AC024770-3|AAK84604.1| 569|Caenorhabditis elegans Mtm (myotubul... 27 2.1
Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical pr... 27 3.8
AC006638-7|AAK85485.2| 491|Caenorhabditis elegans Hypothetical ... 26 5.0
AF125451-2|AAP82633.1| 167|Caenorhabditis elegans Hypothetical ... 26 6.6
AF099922-4|AAK21409.1| 497|Caenorhabditis elegans Hypothetical ... 26 6.6
Z78539-4|CAB01731.1| 591|Caenorhabditis elegans Hypothetical pr... 25 8.7
Z69883-6|CAA93744.2| 461|Caenorhabditis elegans Hypothetical pr... 25 8.7
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 25 8.7
>U00025-4|AAN65312.1| 606|Caenorhabditis elegans Hypothetical
protein PAR2.4b protein.
Length = 606
Score = 45.2 bits (102), Expect = 1e-05
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +1
Query: 22 AAAVAISSALPRVPRDALLAVVPPHAEFNQEFLNRVRMNTIAGEQWYLPVAFARH 186
AAA A+ A+ R + + ++ PHA+ +EF +R R+NTI Q + PV F +
Sbjct: 406 AAAAALDDAVDRYGANTIYLLLSPHADVQKEFFDRARINTIKHYQVFFPVPFVEY 460
>U00025-3|AAA50619.1| 804|Caenorhabditis elegans Hypothetical
protein PAR2.4a protein.
Length = 804
Score = 45.2 bits (102), Expect = 1e-05
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +1
Query: 22 AAAVAISSALPRVPRDALLAVVPPHAEFNQEFLNRVRMNTIAGEQWYLPVAFARH 186
AAA A+ A+ R + + ++ PHA+ +EF +R R+NTI Q + PV F +
Sbjct: 604 AAAAALDDAVDRYGANTIYLLLSPHADVQKEFFDRARINTIKHYQVFFPVPFVEY 658
>AB110824-1|BAD80739.1| 606|Caenorhabditis elegans chondroitin
polymerizing factor-S protein.
Length = 606
Score = 45.2 bits (102), Expect = 1e-05
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +1
Query: 22 AAAVAISSALPRVPRDALLAVVPPHAEFNQEFLNRVRMNTIAGEQWYLPVAFARH 186
AAA A+ A+ R + + ++ PHA+ +EF +R R+NTI Q + PV F +
Sbjct: 406 AAAAALDDAVDRYGANTIYLLLSPHADVQKEFFDRARINTIKHYQVFFPVPFVEY 460
>AB110823-1|BAD80738.1| 804|Caenorhabditis elegans chondroitin
polymerizing factor protein.
Length = 804
Score = 45.2 bits (102), Expect = 1e-05
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +1
Query: 22 AAAVAISSALPRVPRDALLAVVPPHAEFNQEFLNRVRMNTIAGEQWYLPVAFARH 186
AAA A+ A+ R + + ++ PHA+ +EF +R R+NTI Q + PV F +
Sbjct: 604 AAAAALDDAVDRYGANTIYLLLSPHADVQKEFFDRARINTIKHYQVFFPVPFVEY 658
>Z81131-6|CAE17977.2| 734|Caenorhabditis elegans Hypothetical
protein T24D1.1b protein.
Length = 734
Score = 34.3 bits (75), Expect = 0.019
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 7 GSLREAAAVAISSALPRVPRDALLAVVPPHAEFNQEFLNRVRMNTIAGEQWYLPVAFARH 186
G + + VA+ +P +ALL F + L R++ NTI Q Y P+ F+
Sbjct: 552 GDVSFSRGVALMRGAETLPANALLFFTDVDMLFTCDALKRIKSNTILNAQIYFPIVFSEF 611
Query: 187 S 189
S
Sbjct: 612 S 612
>Z81131-5|CAB03422.2| 608|Caenorhabditis elegans Hypothetical
protein T24D1.1a protein.
Length = 608
Score = 34.3 bits (75), Expect = 0.019
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 7 GSLREAAAVAISSALPRVPRDALLAVVPPHAEFNQEFLNRVRMNTIAGEQWYLPVAFARH 186
G + + VA+ +P +ALL F + L R++ NTI Q Y P+ F+
Sbjct: 426 GDVSFSRGVALMRGAETLPANALLFFTDVDMLFTCDALKRIKSNTILNAQIYFPIVFSEF 485
Query: 187 S 189
S
Sbjct: 486 S 486
>AY241925-2|AAO85273.1| 734|Caenorhabditis elegans chondroitin
disaccharide polymerase protein.
Length = 734
Score = 34.3 bits (75), Expect = 0.019
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 7 GSLREAAAVAISSALPRVPRDALLAVVPPHAEFNQEFLNRVRMNTIAGEQWYLPVAFARH 186
G + + VA+ +P +ALL F + L R++ NTI Q Y P+ F+
Sbjct: 552 GDVSFSRGVALMRGAETLPANALLFFTDVDMLFTCDALKRIKSNTILNAQIYFPIVFSEF 611
Query: 187 S 189
S
Sbjct: 612 S 612
>AY241925-1|AAO85274.1| 736|Caenorhabditis elegans chondroitin
disaccharide polymerase protein.
Length = 736
Score = 34.3 bits (75), Expect = 0.019
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 7 GSLREAAAVAISSALPRVPRDALLAVVPPHAEFNQEFLNRVRMNTIAGEQWYLPVAFARH 186
G + + VA+ +P +ALL F + L R++ NTI Q Y P+ F+
Sbjct: 554 GDVSFSRGVALMRGAETLPANALLFFTDVDMLFTCDALKRIKSNTILNAQIYFPIVFSEF 613
Query: 187 S 189
S
Sbjct: 614 S 614
>AB088398-1|BAC76781.1| 715|Caenorhabditis elegans chondroitin
synthase-S protein.
Length = 715
Score = 34.3 bits (75), Expect = 0.019
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 7 GSLREAAAVAISSALPRVPRDALLAVVPPHAEFNQEFLNRVRMNTIAGEQWYLPVAFARH 186
G + + VA+ +P +ALL F + L R++ NTI Q Y P+ F+
Sbjct: 533 GDVSFSRGVALMRGAETLPANALLFFTDVDMLFTCDALKRIKSNTILNAQIYFPIVFSEF 592
Query: 187 S 189
S
Sbjct: 593 S 593
>AB088397-1|BAC76780.1| 726|Caenorhabditis elegans chondroitin
synthase protein.
Length = 726
Score = 34.3 bits (75), Expect = 0.019
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 7 GSLREAAAVAISSALPRVPRDALLAVVPPHAEFNQEFLNRVRMNTIAGEQWYLPVAFARH 186
G + + VA+ +P +ALL F + L R++ NTI Q Y P+ F+
Sbjct: 544 GDVSFSRGVALMRGAETLPANALLFFTDVDMLFTCDALKRIKSNTILNAQIYFPIVFSEF 603
Query: 187 S 189
S
Sbjct: 604 S 604
>Z30215-4|CAA82936.1| 541|Caenorhabditis elegans Hypothetical
protein F40F12.4 protein.
Length = 541
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/54 (25%), Positives = 31/54 (57%)
Frame = +1
Query: 142 IAGEQWYLPVAFARHSQYAHPRFLTPAGLKPQVNTGRFNLHRARTLALAFYRSD 303
+ G+ +LP F + YA +++ +K ++ T FN+ +A T+ ++Y++D
Sbjct: 413 VKGDASFLP--FNENGSYA---YISGPQIKSRLQTPSFNVDKAVTVVFSYYKAD 461
>AY313178-1|AAP79303.1| 569|Caenorhabditis elegans
myotubularin-related protein MTM-9 protein.
Length = 569
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 236 CGLRPAGVRNRGCAYCECRANATGRYHCSPAIVFM 132
CG P +RN CAY E TG + +VF+
Sbjct: 384 CGGHPFSLRNNHCAYAE--GTVTGPFESPVFLVFL 416
>AC024770-4|AAT68891.1| 521|Caenorhabditis elegans Mtm
(myotubularin) family protein9, isoform b protein.
Length = 521
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 236 CGLRPAGVRNRGCAYCECRANATGRYHCSPAIVFM 132
CG P +RN CAY E TG + +VF+
Sbjct: 336 CGGHPFSLRNNHCAYAE--GTVTGPFESPVFLVFL 368
>AC024770-3|AAK84604.1| 569|Caenorhabditis elegans Mtm
(myotubularin) family protein9, isoform a protein.
Length = 569
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 236 CGLRPAGVRNRGCAYCECRANATGRYHCSPAIVFM 132
CG P +RN CAY E TG + +VF+
Sbjct: 384 CGGHPFSLRNNHCAYAE--GTVTGPFESPVFLVFL 416
>Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical
protein C49C3.4 protein.
Length = 1566
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Frame = +1
Query: 34 AISSALPRVPRDALLAVVPPHAEFNQ------EFLNRVRMNTIAGEQWY 162
A+ + +P++PR LLA++ +++FNQ +FLN + + A +Y
Sbjct: 841 AVDTNVPQLPRRLLLAIL-GNSKFNQTKTVQIDFLNPENVTSFANSNYY 888
>AC006638-7|AAK85485.2| 491|Caenorhabditis elegans Hypothetical
protein F41G4.5 protein.
Length = 491
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/54 (24%), Positives = 23/54 (42%)
Frame = +1
Query: 88 PPHAEFNQEFLNRVRMNTIAGEQWYLPVAFARHSQYAHPRFLTPAGLKPQVNTG 249
PP + Q+ N+V N ++W++ F HP LT ++ + G
Sbjct: 339 PPPETWTQDQWNKVEQNCKVTDEWHI---FQESEDATHPNTLTDRAVRYRPGEG 389
>AF125451-2|AAP82633.1| 167|Caenorhabditis elegans Hypothetical
protein Y37E11B.1b protein.
Length = 167
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -2
Query: 156 LLARYR-VHADPIQELLVELCMRRYHRQQRVTRHARQRAGD 37
LL +++ VH P + ++ E+C ++Y + + +H R D
Sbjct: 55 LLRKHQIVHDIPKKSIICEVCGKKYSSKSALAKHKRTHETD 95
>AF099922-4|AAK21409.1| 497|Caenorhabditis elegans Hypothetical
protein F56F11.3 protein.
Length = 497
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -2
Query: 156 LLARYRVHA-DPIQELLVELCMRRYHRQQRVTRHARQRAGD 37
L A +R H + E + C R+ R +TRH R+ GD
Sbjct: 431 LKAHFRTHTGEKPYECSWDGCDWRFARSDELTRHYRKHTGD 471
>Z78539-4|CAB01731.1| 591|Caenorhabditis elegans Hypothetical
protein C31E10.6 protein.
Length = 591
Score = 25.4 bits (53), Expect = 8.7
Identities = 6/31 (19%), Positives = 16/31 (51%)
Frame = -3
Query: 200 CAYCECRANATGRYHCSPAIVFMRTRFRNSW 108
C +C + +YH ++F + ++ ++W
Sbjct: 531 CHLVKCASRENAKYHALSDLLFQKRKYMSTW 561
>Z69883-6|CAA93744.2| 461|Caenorhabditis elegans Hypothetical
protein C27C12.2 protein.
Length = 461
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/40 (27%), Positives = 17/40 (42%)
Frame = -2
Query: 156 LLARYRVHADPIQELLVELCMRRYHRQQRVTRHARQRAGD 37
L R+H + +CMR + R +T H R G+
Sbjct: 391 LTRHIRIHTGQ-KPFQCRICMRAFSRSDHLTTHVRTHTGE 429
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = -3
Query: 248 PVLTCGLRPAGVRNRGCAYCECRANATGRYHCSPAI 141
PV L P + CAY C +G CS +I
Sbjct: 1833 PVFIIELNPGQTCDPSCAYQPCMQRCSGGSSCSNSI 1868
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,839,656
Number of Sequences: 27780
Number of extensions: 81127
Number of successful extensions: 350
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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