Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_G18
(400 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1664 - 38984545-38984615,38984706-38984802,38985362-389855... 29 1.0
10_08_0571 - 18855317-18855541,18855667-18855747,18855849-188559... 29 1.8
06_03_0040 - 15801686-15801993,15802030-15802662,15802989-15803109 29 1.8
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417... 28 2.4
06_03_0923 - 25972063-25972840,25973549-25973620,25973711-259737... 27 4.1
04_04_1272 - 32288142-32288456,32288538-32288670,32288780-322890... 27 5.5
08_02_0482 - 17643603-17643955,17644024-17646604 26 9.5
05_01_0038 + 260080-260380,260852-261022,261764-261810,262266-26... 26 9.5
02_02_0457 + 10503801-10507358 26 9.5
01_01_0978 + 7738232-7740848,7740929-7741320 26 9.5
>01_06_1664 -
38984545-38984615,38984706-38984802,38985362-38985523,
38985736-38985825,38986125-38986226,38986373-38986446,
38986587-38986615,38986766-38986989
Length = 282
Score = 29.5 bits (63), Expect = 1.0
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -1
Query: 349 AVPVTWLGQLSAITMLCGCCRACCALKKVVAFSIHKLGSEF 227
A+ + W G + A T C CC + + F+IH L ++
Sbjct: 51 ALALQWPGTICASTRHCCAINGCCRSEPLQTFTIHGLWPDY 91
>10_08_0571 -
18855317-18855541,18855667-18855747,18855849-18855963,
18856061-18856224,18856307-18856540,18856626-18856781,
18857113-18857244,18857850-18857984,18858071-18858457,
18858708-18858826,18858914-18859124,18859268-18859339,
18859542-18859628,18859993-18860127,18860240-18860368
Length = 793
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/62 (30%), Positives = 23/62 (37%)
Frame = -1
Query: 322 LSAITMLCGCCRACCALKKVVAFSIHKLGSEFAHFLFHFPHLSVESFPDARKFSVDD*EV 143
LS + M CC L V H+ F H H+ S PD KF D +V
Sbjct: 552 LSDLVMNSFCCPQSNCLGAVSELIHHRHKENFVHVSIGESHVCTLSLPDVSKFDEDIVKV 611
Query: 142 TK 137
K
Sbjct: 612 GK 613
>06_03_0040 - 15801686-15801993,15802030-15802662,15802989-15803109
Length = 353
Score = 28.7 bits (61), Expect = 1.8
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +2
Query: 89 KLKMADGGLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRK 208
K+K+ DGGLKRN+ I LG F R R E+ K
Sbjct: 245 KIKLEDGGLKRNL-ISLGTLHEEGLIFHGNRNRKTIEIMK 283
>03_05_0520 +
25139314-25139364,25139580-25139711,25141594-25141731,
25143191-25143241,25143662-25143751,25143854-25144000,
25144108-25144218,25144307-25144375,25144777-25145517,
25145840-25146004,25146376-25146442,25146580-25146704,
25148714-25148983,25149065-25149199,25149316-25149497,
25149669-25149744
Length = 849
Score = 28.3 bits (60), Expect = 2.4
Identities = 9/31 (29%), Positives = 24/31 (77%)
Frame = +2
Query: 152 VIDTEFSSIRERFDAEMRKMEEEMSKFRSEL 244
V DTE ++ +E+F+A+++K +++ ++R ++
Sbjct: 18 VYDTENANQKEKFEADLKKEIKKLQRYRDQI 48
>06_03_0923 -
25972063-25972840,25973549-25973620,25973711-25973747,
25973852-25973910,25974011-25974295,25974653-25974954,
25974986-25975116,25975209-25975296
Length = 583
Score = 27.5 bits (58), Expect = 4.1
Identities = 9/27 (33%), Positives = 12/27 (44%)
Frame = -1
Query: 355 VEAVPVTWLGQLSAITMLCGCCRACCA 275
V V W L+ + CCR CC+
Sbjct: 115 VFVVAAVWFASLALAAFVACCCRCCCS 141
>04_04_1272 -
32288142-32288456,32288538-32288670,32288780-32289020,
32289124-32289340,32289557-32289681,32290873-32292157
Length = 771
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 80 ATHKLKMADGGLKRNIPIKLGDFSVID 160
A +K A GG +RN+P++ G+ + D
Sbjct: 331 AAWAMKDASGGCRRNVPLRCGNTTTTD 357
>08_02_0482 - 17643603-17643955,17644024-17646604
Length = 977
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 89 KLKMADGGLKRNIPIKLGDFSVIDT 163
+L +AD L NIP +LGD V+++
Sbjct: 509 QLDLADNRLTGNIPAELGDLPVLNS 533
>05_01_0038 +
260080-260380,260852-261022,261764-261810,262266-262412,
262495-262569,262826-262935,263032-263159,263368-263429,
263599-263748,263827-263861,264083-264151,264538-264629,
264718-264794,265434-265532
Length = 520
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 101 ADGGLKRNIPI-KLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKFRS 238
A GG+ R + I +LG +++ S RER +AE+R + M K S
Sbjct: 374 AKGGVPRFVLIARLGKVKILNGSEISPRERREAEIRYVRLVMGKAES 420
>02_02_0457 + 10503801-10507358
Length = 1185
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 44 NIPVFV*FNNFHATHKLKMADGGLKRNIPIKLGDFSVIDTEFSSIR 181
+IP+ V ++F A KL++AD G+ + + E+SSIR
Sbjct: 964 SIPLHVWSSSFPALQKLQIADSGITGESQSSVLTSLSVPGEYSSIR 1009
>01_01_0978 + 7738232-7740848,7740929-7741320
Length = 1002
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 68 NNFHATHKLKMADGGLKRNIPIKLGDFSVID 160
N++ +L +AD G IP +LGD V++
Sbjct: 524 NSWKKLSELNLADNGFTGAIPAELGDLPVLN 554
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,070,545
Number of Sequences: 37544
Number of extensions: 177565
Number of successful extensions: 474
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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