Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_G18
(400 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29612-7|AAO61437.1| 205|Caenorhabditis elegans Heat shock prot... 52 2e-07
U29612-6|AAA68804.1| 219|Caenorhabditis elegans Heat shock prot... 52 2e-07
U29612-8|AAW57827.1| 108|Caenorhabditis elegans Heat shock prot... 34 0.043
Z68220-5|CAA92490.2| 282|Caenorhabditis elegans Hypothetical pr... 32 0.17
U41545-5|AAK39137.2| 243|Caenorhabditis elegans Tetraspanin fam... 29 1.2
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr... 29 1.6
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot... 29 1.6
AL132860-12|CAB60508.1| 300|Caenorhabditis elegans Hypothetical... 28 2.1
AC024772-2|AAF60537.2| 756|Caenorhabditis elegans Osm-9 and cap... 28 2.1
AF025459-4|AAB70984.2| 292|Caenorhabditis elegans Hypothetical ... 27 5.0
Z68751-6|CAA92976.1| 202|Caenorhabditis elegans Hypothetical pr... 27 6.5
AL132860-13|CAB60509.1| 292|Caenorhabditis elegans Hypothetical... 27 6.5
AF039052-10|AAF98634.1| 536|Caenorhabditis elegans Hypothetical... 26 8.7
>U29612-7|AAO61437.1| 205|Caenorhabditis elegans Heat shock protein
protein 25,isoform b protein.
Length = 205
Score = 52.0 bits (119), Expect = 2e-07
Identities = 22/49 (44%), Positives = 33/49 (67%)
Frame = +2
Query: 116 KRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRESN 262
+R I + ++SVID EF ++R+RF+ EMR++EEEM + RSE N
Sbjct: 3 ERRIDVNRSNYSVIDNEFGNMRDRFEQEMRRVEEEMKRLRSEFEGYRPN 51
>U29612-6|AAA68804.1| 219|Caenorhabditis elegans Heat shock protein
protein 25,isoform a protein.
Length = 219
Score = 52.0 bits (119), Expect = 2e-07
Identities = 22/49 (44%), Positives = 33/49 (67%)
Frame = +2
Query: 116 KRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRESN 262
+R I + ++SVID EF ++R+RF+ EMR++EEEM + RSE N
Sbjct: 17 ERRIDVNRSNYSVIDNEFGNMRDRFEQEMRRVEEEMKRLRSEFEGYRPN 65
>U29612-8|AAW57827.1| 108|Caenorhabditis elegans Heat shock protein
protein 25,isoform c protein.
Length = 108
Score = 33.9 bits (74), Expect = 0.043
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +2
Query: 344 DSLNSPLIQDEGDGKTLKL 400
D+L SPLI+DE DGKTL+L
Sbjct: 12 DNLKSPLIKDESDGKTLRL 30
>Z68220-5|CAA92490.2| 282|Caenorhabditis elegans Hypothetical
protein T20D3.8 protein.
Length = 282
Score = 31.9 bits (69), Expect = 0.17
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = -1
Query: 265 VVAFSIHKLGSEFAHFLFH-FPHLSVESFPDARKFSVDD*EVTKFNGDISLKTTVSH--F 95
VVAF++H G+EF + +FH +P LS F FS+ ++ F+ ++S+ + H
Sbjct: 193 VVAFTLHAYGAEFRNRIFHVYPCLSSTIFCFLSLFSIYC--ISDFSLELSICFALLHIFI 250
Query: 94 QFVCRVEIV 68
F+C + ++
Sbjct: 251 LFICPLILI 259
>U41545-5|AAK39137.2| 243|Caenorhabditis elegans Tetraspanin family
protein 17 protein.
Length = 243
Score = 29.1 bits (62), Expect = 1.2
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 319 SAITMLCGCCRACCALKKVVAFSI 248
SA+TM+ G C +CC + K+ + +
Sbjct: 215 SALTMMLGICLSCCLISKIRIYHV 238
>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical protein
T06E4.3b protein.
Length = 2514
Score = 28.7 bits (61), Expect = 1.6
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 87 TN*KWLTVVLREISPLNLVTSQSSTLNFRASGNDSTLR*GKWK 215
TN + + LR+I PLNL ++QSS ++F N S LR W+
Sbjct: 1071 TNWYIILMTLRQI-PLNLDSTQSSWISFIEQINYSILRSNIWR 1112
>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical protein
T06E4.3a protein.
Length = 2531
Score = 28.7 bits (61), Expect = 1.6
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 87 TN*KWLTVVLREISPLNLVTSQSSTLNFRASGNDSTLR*GKWK 215
TN + + LR+I PLNL ++QSS ++F N S LR W+
Sbjct: 1071 TNWYIILMTLRQI-PLNLDSTQSSWISFIEQINYSILRSNIWR 1112
>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
protein.
Length = 2514
Score = 28.7 bits (61), Expect = 1.6
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 87 TN*KWLTVVLREISPLNLVTSQSSTLNFRASGNDSTLR*GKWK 215
TN + + LR+I PLNL ++QSS ++F N S LR W+
Sbjct: 1071 TNWYIILMTLRQI-PLNLDSTQSSWISFIEQINYSILRSNIWR 1112
>AL132860-12|CAB60508.1| 300|Caenorhabditis elegans Hypothetical
protein Y56A3A.14 protein.
Length = 300
Score = 28.3 bits (60), Expect = 2.1
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = -1
Query: 283 CCALKKVVAFSIHKLGSEFAHFLFHFPHLSVESFPDARKFSVDD*EVTKFNGDISLKTTV 104
C + K V S+ +G F HF F F + R ++ + +T ++K +
Sbjct: 51 CFSFKFVPFTSLTVVGERFKHFSFRFDIDESSQNANLRSYTDEGTYITLTVPGFTVKHWI 110
Query: 103 SHFQFV-CRVEIVKL 62
H +V CR +KL
Sbjct: 111 EHVAYVLCRNNSIKL 125
>AC024772-2|AAF60537.2| 756|Caenorhabditis elegans Osm-9 and
capsaicin receptor-relatedprotein 4 protein.
Length = 756
Score = 28.3 bits (60), Expect = 2.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 182 ERFDAEMRKMEEEMSKFRSELMNRE 256
E F+ + +KM EE KFR EL +
Sbjct: 701 EEFECQRKKMHEERRKFREELRTNQ 725
>AF025459-4|AAB70984.2| 292|Caenorhabditis elegans Hypothetical
protein H14A12.3 protein.
Length = 292
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = -1
Query: 331 LGQLSAITMLCGCCRACCALKKVVAFSIHKLGSEFAHFLFHFPHL 197
L Q I+ CCR CA ++V ++H G PHL
Sbjct: 222 LPQDQLISFYISCCRLVCASYQMVPKTVHPQGLSVFMAESQLPHL 266
>Z68751-6|CAA92976.1| 202|Caenorhabditis elegans Hypothetical
protein T05E11.8 protein.
Length = 202
Score = 26.6 bits (56), Expect = 6.5
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +2
Query: 86 HKLKMA--DGGLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKFRSE 241
HK K A K+N + + S + T+ S+IRE D + E + R+E
Sbjct: 89 HKEKEAVRQAETKKNTTTVINNLSSVATKLSAIRENKDQTRKAQHEAIEALRNE 142
>AL132860-13|CAB60509.1| 292|Caenorhabditis elegans Hypothetical
protein Y56A3A.15 protein.
Length = 292
Score = 26.6 bits (56), Expect = 6.5
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = -1
Query: 283 CCALKKVVAFSIHKLGSEFAHFLFHFPHLSVESFPDARKFSVDD*EVTKFNGDISLKTTV 104
C + + V S+ +G F HF F+F + R ++ + +T ++K +
Sbjct: 51 CFSFEFVPFTSLTVVGERFKHFSFYFDIDESTQNANLRSYTDEGTYITLNVPGFTVKHWI 110
Query: 103 SHFQFV-CRVEIVKL 62
H +V CR +KL
Sbjct: 111 EHVAYVLCRHNSIKL 125
>AF039052-10|AAF98634.1| 536|Caenorhabditis elegans Hypothetical
protein T22D1.1 protein.
Length = 536
Score = 26.2 bits (55), Expect = 8.7
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +2
Query: 68 NNFHATHKLKMADGGLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRKM 211
N KL+M G+K IP K+ +S I +F AE +M
Sbjct: 132 NTIENLKKLEMESNGVKVEIPFKMACYSAPKPVIICISPQFVAEQWQM 179
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,730,769
Number of Sequences: 27780
Number of extensions: 162493
Number of successful extensions: 464
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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