Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G16
         (186 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1014 - 29687343-29687410,29688054-29688191,29689246-296892...    26   4.9  
08_01_0685 + 6025975-6026074,6026168-6026357,6026963-6027034,602...    25   6.5  

>03_05_1014 -
           29687343-29687410,29688054-29688191,29689246-29689294,
           29689623-29689728,29690184-29690332,29690840-29690921,
           29691308-29691360,29691644-29691729,29691855-29691909,
           29692179-29692579,29693564-29693660,29694191-29694322,
           29694426-29694476,29694659-29694751,29694917-29694992,
           29695711-29695856,29696009-29696043,29696056-29696107,
           29696290-29696401,29696617-29696813,29697456-29697560,
           29697667-29697819,29698317-29698424,29698608-29698752,
           29699374-29699432,29701397-29701441,29701677-29701730,
           29701901-29702113,29702873-29702958,29704492-29704572,
           29704670-29704729,29705599-29705644,29706212-29706286,
           29706376-29706512,29708306-29708366,29708726-29708743,
           29709710-29709743,29709811-29709902,29709997-29710029
          Length = 1260

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 38  LVFSEFNKRDHFNISEKNEFIFIKRFMAI 124
           ++FS    RD+ +++E   F+   RF+A+
Sbjct: 238 ILFSNITNRDNLHLNEYGHFLLSIRFIAV 266


>08_01_0685 + 6025975-6026074,6026168-6026357,6026963-6027034,
            6027187-6027258,6027354-6027425,6027784-6027855,
            6027980-6028051,6028134-6028205,6028483-6028554,
            6028791-6028865,6028970-6029041,6029134-6029199,
            6029267-6029332,6029409-6029453,6029542-6029606,
            6029697-6030076,6030455-6030653,6030725-6030883,
            6030966-6031084,6031156-6031200,6031226-6031791,
            6031871-6032021,6032117-6032454,6033702-6033765,
            6034329-6034370,6035572-6035575,6035853-6036039,
            6037252-6037323,6037687-6037758,6037867-6037938,
            6038019-6038090,6038651-6038725,6038815-6038886,
            6038988-6039053,6039163-6039228,6039348-6039392,
            6039469-6039533,6039615-6039994,6040070-6040202,
            6040354-6040512,6040599-6040717,6040805-6041015,
            6041155-6041386,6041469-6041619,6041725-6042084
          Length = 1952

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 38   LVFSEFNKRDHFNISEKNEFIFIKRFMAINQDFSR-TLKANP 160
            L F+ FN R  F +S++ E I  K   A+N    R  L+A+P
Sbjct: 1059 LHFANFNLRILFKLSKQRELIQQKCLAALNTILGRWGLRASP 1100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,374,464
Number of Sequences: 37544
Number of extensions: 39103
Number of successful extensions: 92
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 14,793,348
effective HSP length: 41
effective length of database: 13,254,044
effective search space used: 265080880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)