Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G16
         (186 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48584-8|CAK55179.1|  435|Caenorhabditis elegans Hypothetical pr...    29   0.33 
Z48584-7|CAH04712.1|  448|Caenorhabditis elegans Hypothetical pr...    29   0.33 
Z48584-5|CAD57717.1|  501|Caenorhabditis elegans Hypothetical pr...    29   0.33 
Z48584-4|CAD57716.1|  536|Caenorhabditis elegans Hypothetical pr...    29   0.33 
Z48584-3|CAD57715.1|  524|Caenorhabditis elegans Hypothetical pr...    29   0.33 
Z48584-2|CAA88477.2|  481|Caenorhabditis elegans Hypothetical pr...    29   0.33 
Z34802-5|CAA84337.1|  610|Caenorhabditis elegans Hypothetical pr...    25   9.4  
U80030-3|AAG24160.2|  367|Caenorhabditis elegans Serpentine rece...    25   9.4  

>Z48584-8|CAK55179.1|  435|Caenorhabditis elegans Hypothetical
           protein ZK1321.2f protein.
          Length = 435

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +2

Query: 26  PNVLLVFSEFNKRDHFNISEKNEFIF 103
           PN LL   + NKR HF +S+ NEF F
Sbjct: 66  PNSLL--GDRNKRQHFFVSDTNEFFF 89


>Z48584-7|CAH04712.1|  448|Caenorhabditis elegans Hypothetical
           protein ZK1321.2e protein.
          Length = 448

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +2

Query: 26  PNVLLVFSEFNKRDHFNISEKNEFIF 103
           PN LL   + NKR HF +S+ NEF F
Sbjct: 79  PNSLL--GDRNKRQHFFVSDTNEFFF 102


>Z48584-5|CAD57717.1|  501|Caenorhabditis elegans Hypothetical
           protein ZK1321.2d protein.
          Length = 501

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +2

Query: 26  PNVLLVFSEFNKRDHFNISEKNEFIF 103
           PN LL   + NKR HF +S+ NEF F
Sbjct: 120 PNSLL--GDRNKRQHFFVSDTNEFFF 143


>Z48584-4|CAD57716.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK1321.2c protein.
          Length = 536

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +2

Query: 26  PNVLLVFSEFNKRDHFNISEKNEFIF 103
           PN LL   + NKR HF +S+ NEF F
Sbjct: 155 PNSLL--GDRNKRQHFFVSDTNEFFF 178


>Z48584-3|CAD57715.1|  524|Caenorhabditis elegans Hypothetical
           protein ZK1321.2b protein.
          Length = 524

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +2

Query: 26  PNVLLVFSEFNKRDHFNISEKNEFIF 103
           PN LL   + NKR HF +S+ NEF F
Sbjct: 155 PNSLL--GDRNKRQHFFVSDTNEFFF 178


>Z48584-2|CAA88477.2|  481|Caenorhabditis elegans Hypothetical
           protein ZK1321.2a protein.
          Length = 481

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +2

Query: 26  PNVLLVFSEFNKRDHFNISEKNEFIF 103
           PN LL   + NKR HF +S+ NEF F
Sbjct: 112 PNSLL--GDRNKRQHFFVSDTNEFFF 135


>Z34802-5|CAA84337.1|  610|Caenorhabditis elegans Hypothetical
           protein M88.6a protein.
          Length = 610

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = +2

Query: 20  HNPNVLLVFSEFNKRDHFNISEKNEFIFIKRFM 118
           H PN++ +  ++N+ +  +  +   FIF K+ +
Sbjct: 341 HTPNLITLLLQYNQIEELSSRKLTHFIFKKKLI 373


>U80030-3|AAG24160.2|  367|Caenorhabditis elegans Serpentine
           receptor, class w protein115 protein.
          Length = 367

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +3

Query: 9   HEAFIIQMFY*CSLNLTNVITLIYPKKMNLFLLKDLWR 122
           ++ F+ + FY  +  +++++  I    + L L+ DLWR
Sbjct: 211 NDGFLAKYFYLFNSFVSDIVPCILLPIVTLLLVMDLWR 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,358,453
Number of Sequences: 27780
Number of extensions: 46130
Number of successful extensions: 100
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 219895322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)