Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G16
         (186 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   1.0  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    19   5.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    19   5.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    18   9.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    18   9.5  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    18   9.5  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +2

Query: 17  FHNPNVLLVFS----EFNKRDHFNISEKNEFIFIKRFMAINQDFSRTL 148
           FHN +  L+ +    EF+  +H N+  KN   +++ +    +DF   L
Sbjct: 262 FHNKDDDLILTLGKKEFSHYEHQNVFVKNSGQWLREYDRELEDFDGRL 309


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -3

Query: 115 KSFNKNKFIFFGYIKVITFVKFREH 41
           K  +KN  +FFG +       + EH
Sbjct: 310 KVMSKNGVLFFGLVNNSAIGCWNEH 334


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 117 INLLIKINSFFSDILK*SRLLNSENTNRT 31
           ++L  +  S   D+L+  R L  E++NRT
Sbjct: 254 VHLYTRDQSETYDVLRSWRNLMDEHSNRT 282


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 5/21 (23%), Positives = 12/21 (57%)
 Frame = +2

Query: 29  NVLLVFSEFNKRDHFNISEKN 91
           NV+ +     ++D FN  +++
Sbjct: 457 NVMFIQHHIQRQDEFNAEDQD 477


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
          protein 8 protein.
          Length = 416

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 45 SLNLTNVITLIYPKK 89
          S NLTN + +IY  K
Sbjct: 22 SRNLTNSLKVIYEWK 36


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -3

Query: 115 KSFNKNKFIFFGYIKVITFVKFREH 41
           K  +KN  +FFG +       + EH
Sbjct: 310 KIMSKNGVLFFGLMNNSAIGCWNEH 334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,907
Number of Sequences: 438
Number of extensions: 572
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 41
effective length of database: 128,385
effective search space used:  2567700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)