Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_G15
(428 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 239 2e-64
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 237 5e-64
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 105 3e-24
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 67 9e-13
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 0.53
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 27 1.2
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 3.8
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 6.6
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 25 6.6
SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr 2|... 25 6.6
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 24 8.7
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 239 bits (584), Expect = 2e-64
Identities = 104/139 (74%), Positives = 120/139 (86%)
Frame = +1
Query: 10 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 189
ASLRF G+LNVDL EFQTNLVPYPRIHFPLVTY+P++SA KA+HE SV EITN CFEP
Sbjct: 244 ASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPY 303
Query: 190 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 369
NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+P
Sbjct: 304 NQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEP 363
Query: 370 PTVVPGGDLANVQRAVCML 426
P VPG +A V RAVCML
Sbjct: 364 PQHVPGSGIAKVNRAVCML 382
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 237 bits (580), Expect = 5e-64
Identities = 104/139 (74%), Positives = 119/139 (85%)
Frame = +1
Query: 10 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 189
ASLRF+G+LNVDL EFQTNLVPYPRIHFPLVTYAP++SA KA+HE SV EITN CFEP
Sbjct: 240 ASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPY 299
Query: 190 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 369
NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +P
Sbjct: 300 NQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRP 359
Query: 370 PTVVPGGDLANVQRAVCML 426
P + G ++A V RAVCML
Sbjct: 360 PQHIEGSEIAKVDRAVCML 378
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 105 bits (252), Expect = 3e-24
Identities = 47/120 (39%), Positives = 71/120 (59%)
Frame = +1
Query: 13 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPAN 192
S RF G LN DL + N+VP+PR+HF +V +AP+ + + + +SV E+T F+ N
Sbjct: 239 SFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANN 298
Query: 193 QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 372
MV DPRHG+Y+ L+RG V K+V+ I +++TK + FV+W P + PP
Sbjct: 299 MMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPP 358
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 67.3 bits (157), Expect = 9e-13
Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Frame = +1
Query: 1 ARGASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS---AEKAYHEQLSVAEITN 171
A +LR+ G +N DL +L+P PR HF L +Y P + E + +V ++
Sbjct: 238 ASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMR 297
Query: 172 ACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFK 348
P NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+ W P +
Sbjct: 298 RLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQ 357
Query: 349 VGINYQPPTV 378
V ++ + P +
Sbjct: 358 VALSKKSPYI 367
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 0.53
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +1
Query: 163 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 288
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 27.1 bits (57), Expect = 1.2
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = +1
Query: 223 KYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAN 402
++ + Y + KDVN + TI +W PTG ++ Y V D N
Sbjct: 142 RHSSFAQYYLYNTETKDVNM-LGQDNEHWTISLAEWSPTGHQLSFVYNNDLYVRKND-GN 199
Query: 403 VQR 411
VQR
Sbjct: 200 VQR 202
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.4 bits (53), Expect = 3.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 294 GSDSRVDVLGHDVTAVQHAAGHVFAVT 214
G+D + GH V +Q A G VF+ T
Sbjct: 421 GADEKPKYAGHVVAVLQRAPGQVFSGT 447
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 24.6 bits (51), Expect = 6.6
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -3
Query: 417 DGALHIGEITAGHHGRGLVVDTDLETGRTPVHELDGALGLDGSDSRVDVL 268
D + G+IT G V++ + ELD L DGS+S VL
Sbjct: 958 DDVSNSGDITMGEEPSEPVINFEKFGVEVDYDELDEELRNDGSESMASVL 1007
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 24.6 bits (51), Expect = 6.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 31 ALNVDLTEFQTNLVPYPRIHFPLVT 105
A +V++ E +TN +P HFP T
Sbjct: 368 AQSVEVPENETNQIPTTEEHFPATT 392
>SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 24.6 bits (51), Expect = 6.6
Identities = 14/50 (28%), Positives = 20/50 (40%)
Frame = -3
Query: 294 GSDSRVDVLGHDVTAVQHAAGHVFAVTRVTFHHLVGGLEASVRDLRYREL 145
G D +D G D T GH A + +G L+ + R +EL
Sbjct: 41 GLDIMLDYAGQDATKAYQDIGHSIAADELLEEMYIGDLKPGTEE-RLKEL 89
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 24.2 bits (50), Expect = 8.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 221 ANTWPAACCTAVTSC 265
A+ W A CT+V SC
Sbjct: 554 ASQWAAVACTSVVSC 568
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,708,866
Number of Sequences: 5004
Number of extensions: 32445
Number of successful extensions: 110
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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