Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_G13
(222 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 27 0.34
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 27 0.34
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 26 0.59
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 0.77
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo... 26 0.77
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 25 1.4
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 25 1.8
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 24 2.4
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom... 24 2.4
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 24 3.1
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar... 24 3.1
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch... 24 3.1
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p... 24 3.1
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 23 4.1
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 23 4.1
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p... 23 4.1
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 23 4.1
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 23 5.5
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 23 7.2
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces... 23 7.2
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 7.2
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas... 23 7.2
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 22 9.5
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 22 9.5
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||... 22 9.5
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 22 9.5
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 22 9.5
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 27.1 bits (57), Expect = 0.34
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +2
Query: 53 STGM*NSSKSQSHNIHKTPENYNKTNNGPSLYRSCSALYISTYVKSDDPSDDID 214
S G + K+Q +N+HK P + N S +S A S +K D D D
Sbjct: 201 SFGSYDEVKNQGNNLHKVPSLVSIIRNARSSEQSRIAANSSCLLKGSDTEIDED 254
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 27.1 bits (57), Expect = 0.34
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 75 PSPSHTTFTKHLKTIIR-PTMGHLFIGVVQRYIYQRMLNL-MIHQTTSTCK 221
PSP H F L I T+ H + + QRY+ + ++NL +H T S K
Sbjct: 780 PSPLHALFLALLLGIKDLMTLYHTTVNIHQRYLEKGLMNLGHLHLTLSGSK 830
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 26.2 bits (55), Expect = 0.59
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -1
Query: 84 WDLDEFYIPVEPITMKNDLNGLG 16
W E+Y+P+ P+ + N G+G
Sbjct: 865 WIEPEYYVPILPMVLVNGAEGIG 887
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 0.77
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +2
Query: 53 STGM*NSSKSQSHNIHKTPENYNKTNNGPSLYRSCSALYISTYVKSDDPS 202
S+GM +SS S S ++ + +Y+ ++ S S +++ STY D PS
Sbjct: 136 SSGMSSSSLSHSSSVPSSSSSYHSSSMTTSGLSSSASIVSSTY--RDGPS 183
>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
Adh1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 350
Score = 25.8 bits (54), Expect = 0.77
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 34 VFHSDGFYRDVKFIQVPVTQHSQN 105
VFH+ G +VKF +VPV + Q+
Sbjct: 11 VFHTHGGPENVKFEEVPVAEPGQD 34
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.0 bits (52), Expect = 1.4
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +2
Query: 2 SRDRSPSPFKSFFIVMGSTGM*NSSKSQSHNIHKTPENYNKTNNGPSLYRSCSALY 169
S +SP S ++ + + SKS+SHN H + + T+N LY
Sbjct: 516 SSQKSPGKLSSKGLLNSFSPISPFSKSKSHNHHPSSQVEKSTSNSKGSMLPLDTLY 571
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 24.6 bits (51), Expect = 1.8
Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +2
Query: 80 SQSHNIHKTPENYNKTNNG-PSLYR 151
S S ++H++ N++ TN+G P+L R
Sbjct: 458 SNSFSVHRSSTNHSSTNSGSPNLSR 482
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 24.2 bits (50), Expect = 2.4
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = +2
Query: 17 PSPFKSFFIVMGSTGM*NSSKSQSHNIHKTPENYNKTNNGPSLYRSCSALYISTYVKSDD 196
PS + F + ST N + + SHNIH N+ + + + S + Y+K ++
Sbjct: 159 PSSSREFSGLYLSTVFKNLALASSHNIHIVDLNHRNPIDSLTTHTSMINSVVFQYLKDEN 218
>SPCC1235.10c |sec6||exocyst complex subunit
Sec6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 730
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 104 TPENYNKTNNGPSLYRSCSALYISTYVKSDDPS 202
TP +YN S+Y+ C ++ V D P+
Sbjct: 291 TPPSYNIAKTFASIYQECLVGLVTKAVSLDTPA 323
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 23.8 bits (49), Expect = 3.1
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +2
Query: 68 NSSKSQSHNIHKTPENYNK-TNNGPSLYRSCS 160
NS S +N+H ENY K P +RS S
Sbjct: 473 NSLLSPKYNLHCKRENYFKLKKRDPQQFRSAS 504
>SPAC23H3.03c |||nitrogen permease regulator
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 23.8 bits (49), Expect = 3.1
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 83 QSHNIHKTPENYNKTNNGPSLYRSCSALYIST 178
Q HNI+ N P R C+A Y+ST
Sbjct: 260 QFHNIYAMTTNAPNLLQDPDFQRECTA-YVST 290
>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 370
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +3
Query: 60 GCKIHPSPSHTTFTKHLKTIIRPTMGHL 143
G ++H PSH L + P +GH+
Sbjct: 238 GMRLHSGPSHPYAPFILTCTLNPIVGHI 265
>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 264
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/49 (22%), Positives = 25/49 (51%)
Frame = +2
Query: 17 PSPFKSFFIVMGSTGM*NSSKSQSHNIHKTPENYNKTNNGPSLYRSCSA 163
PS S +++ M +++ +HN T ++ +N+ P ++CS+
Sbjct: 49 PSNSASSYLINPDPTMDLEAQTFNHNESTTSVGHDNSNSPPKCRKTCSS 97
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 23.4 bits (48), Expect = 4.1
Identities = 6/15 (40%), Positives = 9/15 (60%)
Frame = -2
Query: 113 FQVFCECCVTGTWMN 69
F + C CC+T W +
Sbjct: 36 FALLCLCCITSYWFS 50
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 119 NKTNNGPSLYRSC 157
NKTN PS +R C
Sbjct: 710 NKTNEAPSSFRKC 722
>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 506
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 78 SPSHTTFTKHLKTII 122
SPSHT TKHL ++
Sbjct: 361 SPSHTHSTKHLVDVL 375
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 49 HHYEKRLKWTRRSVS 5
HH E+ +K RRSVS
Sbjct: 754 HHVEEAMKMARRSVS 768
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 23.0 bits (47), Expect = 5.5
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +2
Query: 2 SRDRSPSPFKSFFIVMGSTGM*NSSKSQSHNIHKTPENYNKTNNGPS 142
S+ SPS S S G+ S+ SQS N + T + N N PS
Sbjct: 97 SQTGSPSQSLSSNKEPSSPGISPSNDSQSQNTNHTSISANPYVNNPS 143
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 71 SSKSQSHNIHKTPENYNKTNNGPSLYR-SCSALYI 172
S+ S SH IH+ TN P+ C+ +Y+
Sbjct: 396 SAYSSSHGIHQRIPASTPTNTNPADQNPPCNTIYV 430
>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 22.6 bits (46), Expect = 7.2
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Frame = +2
Query: 11 RSPSPFKSFFIVMGSTGM*NSSKSQSHNIHKTP---ENYN-----KTNNGPSLYRSCSA- 163
+S S K FF + +SK+ +H + +P E +N K +NGP L+ CS
Sbjct: 42 KSISQMKDFF-----SNFPGNSKANNHFLCNSPLKFEIFNNEKSVKPSNGPHLFTRCSCR 96
Query: 164 ---LYISTYVKSDDPSD 205
L Y+ P D
Sbjct: 97 CNKLLSGDYITQQQPID 113
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 144 FIGVVQRYIYQRMLNLMIHQTTS 212
F+GVV+RY Q N I +T+S
Sbjct: 476 FLGVVERYQNQYANNCKILKTSS 498
>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
PP1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +2
Query: 77 KSQSHNIHKTPENYNKTNN 133
+ S N H TP NKT N
Sbjct: 307 QGSSQNWHMTPPRKNKTGN 325
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 74 SKSQSHNIHKTPENYNKTNNGPSLYRS 154
S S SHN P Y+ ++ PS++ S
Sbjct: 215 SSSSSHNSLHEPVIYDFSSENPSIHPS 241
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 20 SPFKSFFIVMGSTGM 64
SP SFF+ +GS G+
Sbjct: 1224 SPDSSFFVTLGSDGV 1238
>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 295
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 126 PTMGHLFIGVVQRYIYQRMLNLMIHQ 203
P + HLF + ++IY++ NL ++Q
Sbjct: 94 PLVIHLFFILNYKWIYRKDYNLCLNQ 119
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 22.2 bits (45), Expect = 9.5
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +3
Query: 105 HLKTIIRPTMGHLFIGVVQRYIYQRMLNLMIHQTTSTC 218
H+ ++ G I +VQR + +NL+ HQ C
Sbjct: 246 HIASVNAVNEGAYVIAIVQRDTWTYDINLVGHQGPLEC 283
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 68 NSSKSQSHNIHKTPENYNK 124
NSS + S+ T +NYNK
Sbjct: 299 NSSIASSNRTQHTEDNYNK 317
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 953,947
Number of Sequences: 5004
Number of extensions: 17014
Number of successful extensions: 62
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 53
effective length of database: 2,097,266
effective search space used: 41945320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -