Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G13
         (222 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0923 - 22649420-22649605,22649694-22649774,22649867-226501...    27   1.5  
04_03_0624 - 18115559-18115725,18115993-18116872                       27   2.7  
12_02_0689 + 22160627-22160720,22161331-22161425,22161679-221618...    26   4.7  
09_04_0708 + 19648511-19648808,19649189-19649280,19650850-196510...    25   6.2  
12_02_0226 + 15887835-15891188                                         25   8.3  
03_06_0495 + 34323082-34323173,34323600-34323742,34324265-343243...    25   8.3  
03_05_0856 - 28271274-28271408,28271532-28271645,28271950-282720...    25   8.3  

>08_02_0923 -
           22649420-22649605,22649694-22649774,22649867-22650146,
           22650412-22650716,22650809-22650961,22651425-22652261
          Length = 613

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 81  DLDEFYIPVEPITMKNDLNGLGDLSLE 1
           D    ++ VEP +  ND+NG  DLS E
Sbjct: 417 DAQVIFMGVEPESANNDMNGFLDLSAE 443


>04_03_0624 - 18115559-18115725,18115993-18116872
          Length = 348

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +2

Query: 131 NGPSLYRSCS-ALYISTYVKSDDP 199
           NGP    +CS   Y + Y+KSDDP
Sbjct: 266 NGPGYICNCSKGFYGNPYLKSDDP 289


>12_02_0689 +
           22160627-22160720,22161331-22161425,22161679-22161822,
           22162256-22162513,22162595-22162666,22162759-22162824,
           22163212-22163346,22163562-22163697,22163807-22163983,
           22164086-22164192,22164281-22164421,22164604-22164740,
           22164823-22165076,22165158-22165300,22165423-22165581,
           22166049-22166461,22167369-22167474
          Length = 878

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +2

Query: 107 PENYNKTNNGPSLYRSCSALYISTYVKSDDPSDDI 211
           PEN   T + P +YR      I  + K+  P +++
Sbjct: 668 PENIQSTQSSPDMYRIKRGNAIPAFPKNRQPMEEV 702


>09_04_0708 +
           19648511-19648808,19649189-19649280,19650850-19651000,
           19651779-19651906,19652099-19652257,19652325-19652507,
           19652978-19653178,19653269-19653289
          Length = 410

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -1

Query: 78  LDEFYIPVEPITMKNDLNGLGDL 10
           L E  I VEPI   NDL+ LG L
Sbjct: 166 LQELLILVEPIDNANDLDKLGGL 188


>12_02_0226 + 15887835-15891188
          Length = 1117

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = -2

Query: 167 ITLNNSYKEMAHCWSYYSFQVFCECCVT-GTW 75
           I L  S K+  H    Y   ++ ECC T  TW
Sbjct: 763 IKLAGSAKDFKHMRHLYREMIWAECCPTVDTW 794


>03_06_0495 +
           34323082-34323173,34323600-34323742,34324265-34324315,
           34324405-34324626,34324731-34324833,34325156-34325552,
           34326564-34326735,34326995-34327089,34327246-34327455
          Length = 494

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 78  LDEFYIPVEPITMKNDLNGLGDL 10
           LDE    VE I M NDL+ +G L
Sbjct: 81  LDELQEHVESIDMANDLHSIGGL 103


>03_05_0856 -
           28271274-28271408,28271532-28271645,28271950-28272020,
           28273791-28273839,28274721-28274812,28274901-28274943,
           28275051-28275163,28275240-28275355,28275474-28275562,
           28276724-28276765,28277397-28277507,28278407-28278511,
           28278773-28278850,28278940-28279021,28279123-28279280
          Length = 465

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
 Frame = +2

Query: 53  STG-M*NSSKSQSHNIHKTPENYNKTNNGPSLYRSCSALYI----STYVKSDDPSDDID 214
           +TG M + S      +  TP NY + NNGP   R   + +       Y   DDP   I+
Sbjct: 210 NTGQMYHGSNYHQEIVAATPSNYFEENNGPREVRLDDSQFYRQDNQEYSADDDPLPGIE 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,850,472
Number of Sequences: 37544
Number of extensions: 95041
Number of successful extensions: 237
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 14,793,348
effective HSP length: 53
effective length of database: 12,803,516
effective search space used: 256070320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)