Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_G12
(398 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0848 + 23636478-23638058 29 1.8
03_02_0184 + 6232429-6232515,6232634-6232751,6233198-6233286,623... 29 1.8
01_06_0825 - 32245725-32245817,32246015-32248017,32248132-32248162 29 1.8
11_08_0102 - 28354880-28355056,28355159-28355376,28355634-283557... 28 2.4
08_02_0960 + 23058393-23059739 27 4.1
01_01_0855 - 6666854-6666969,6667107-6667230,6667679-6667849,666... 27 5.5
08_01_0678 + 5878291-5878461,5879722-5879984,5881658-5881729,588... 27 7.2
05_01_0212 + 1601861-1603600 27 7.2
04_04_1158 - 31342934-31343272,31343508-31343658,31343745-313439... 27 7.2
09_06_0193 - 21460365-21460679,21460781-21460931,21461030-214612... 26 9.5
08_01_0576 - 5114636-5115151,5115254-5116183,5116898-5117614,511... 26 9.5
07_01_0026 + 190568-190829,192475-194534,194620-195168 26 9.5
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093... 26 9.5
05_06_0057 + 25253497-25253589,25253722-25253799,25254583-252546... 26 9.5
>12_02_0848 + 23636478-23638058
Length = 526
Score = 28.7 bits (61), Expect = 1.8
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = -1
Query: 392 TPVIALAVARAMLLPASTLPVKAIADALRLPATIPLAANPSLASNHSPFPVHRTIPVKK 216
+P +AV R LPA TLPV+ D P I A+ P +++ P P R P ++
Sbjct: 37 SPSPDVAVRRDGFLPAVTLPVQRAGDTPPPPPIID-ASPPPPSTSPPPPPPRRGRPARR 94
>03_02_0184 +
6232429-6232515,6232634-6232751,6233198-6233286,
6233364-6233428,6233520-6233608,6234167-6234300,
6234387-6235133
Length = 442
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -1
Query: 350 PASTLPVKA--IADALRLPATIPLAANPSLASNHSPFPVHRTIPVKKFTTQEAQQFP 186
P S +P + + A L A A+P+ S +P PVHR P+ F+T+ Q+ P
Sbjct: 282 PRSVVPTSSPSLIGASPLSARSFSFASPAARSTTTP-PVHRGAPLTPFSTKGGQKAP 337
>01_06_0825 - 32245725-32245817,32246015-32248017,32248132-32248162
Length = 708
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = -1
Query: 311 LRLPATIPLAANPSLASNHSPFPVHRTIPVKKFTTQEAQQFPIALKLL*SNR 156
L++P PL AS P+ IPV A QFP+ ++ NR
Sbjct: 531 LKIPTLSPLHKPDLFASFREQVPLPEPIPVSSVNLNNAVQFPLPKQIDSGNR 582
>11_08_0102 -
28354880-28355056,28355159-28355376,28355634-28355712,
28356451-28356519,28356602-28356681,28356818-28356925,
28357103-28357169,28357894-28357959,28358042-28358119,
28358198-28358250,28359542-28359575,28359851-28359865,
28360082-28360109,28360628-28360716,28361688-28361810,
28362192-28362296,28362381-28362485,28362924-28363139,
28364656-28364845,28365193-28365418,28366096-28366162
Length = 730
Score = 28.3 bits (60), Expect = 2.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 100 SAWSRDISYDYRNITILKIRF 162
S W D DY+N+ ILK++F
Sbjct: 239 SQWGHDFRPDYKNLGILKVQF 259
>08_02_0960 + 23058393-23059739
Length = 448
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 398 LITPVIALAVARAMLLPASTLPVKAIADALRL 303
+ +PV+ LA+ A LLPAS V + L+L
Sbjct: 1 MASPVLVLALVAATLLPASHCSVSGVGFQLKL 32
>01_01_0855 -
6666854-6666969,6667107-6667230,6667679-6667849,
6668171-6668276,6668356-6668532,6669213-6669442
Length = 307
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/24 (62%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -1
Query: 374 AVARAMLLP-ASTLPVKAIADALR 306
AV R LLP AST P +A+ DALR
Sbjct: 48 AVLRRRLLPFASTAPGRALVDALR 71
>08_01_0678 +
5878291-5878461,5879722-5879984,5881658-5881729,
5881807-5881878,5882092-5882166,5882443-5882517,
5883623-5883667,5883767-5883831,5883919-5884203,
5884234-5884298,5884435-5884636,5884735-5884905,
5885237-5885355,5886699-5886909,5887007-5887238,
5887325-5887475,5887547-5887945
Length = 890
Score = 26.6 bits (56), Expect = 7.2
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Frame = +1
Query: 214 NFLTGIVLWTGKGLWLLAKLGFAARGIVAGSLKASA--MAFTGNVEAGSNIARATASAMT 387
NF+ + W GKG + LGF I A S+ S N G N + +
Sbjct: 429 NFMEIHLFWAGKGTCCIPTLGFYGPSISALSVSFSGDPGLNINNTTNGENTSSGRRGLVV 488
Query: 388 GVI 396
GV+
Sbjct: 489 GVV 491
>05_01_0212 + 1601861-1603600
Length = 579
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -1
Query: 356 LLPASTLPVKAIADALRLPATIPLAANPSLASNHSPFP 243
LLP +T KAI L+ PA P ++ AS SP P
Sbjct: 127 LLPRATAAEKAIRLLLKSPAVSPSSSPKKSASPPSPPP 164
>04_04_1158 -
31342934-31343272,31343508-31343658,31343745-31343976,
31344173-31344284,31344572-31344690,31344772-31344936,
31345049-31345247,31345351-31345733,31345838-31345902,
31346003-31346047,31346402-31346467,31346707-31346778,
31346907-31346981,31347086-31347157,31347255-31347326,
31347954-31348022,31348109-31348180,31348280-31348351,
31348756-31348827,31349295-31349366,31349528-31349711,
31350082-31350220
Length = 948
Score = 26.6 bits (56), Expect = 7.2
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +1
Query: 214 NFLTGIVLWTGKGLWLLAKLGFAARGIVAGSLKASAMAFTGNVEAGSNIARATASAMTGV 393
NF+ + W GKG + G+ I A SLK + F V + + A+ +S+ TGV
Sbjct: 543 NFVEIHLFWAGKGTCCIPAQGYYGPSISALSLKPN---FIPTVRSAA--AQRKSSSKTGV 597
Query: 394 I 396
I
Sbjct: 598 I 598
>09_06_0193 -
21460365-21460679,21460781-21460931,21461030-21461267,
21461364-21461571,21461776-21461975,21462085-21462186,
21462617-21463967
Length = 854
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 61 VLSRKE*LYISRGSAWSRDISYDYRNITILKIRFDHNNFKAMGNC 195
VL +E + + R S+WS ++RN +L + H N + C
Sbjct: 553 VLDGRE-VAVKRLSSWSEQGIVEFRNEVVLIAKLQHRNLVRLVGC 596
>08_01_0576 -
5114636-5115151,5115254-5116183,5116898-5117614,
5119630-5119746,5119930-5120295,5121365-5121634
Length = 971
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = -1
Query: 344 STLPVKAIADALRLPATIPLAANPSLASNHSPFPVHRTIPVKKFTT 207
+T+PV + P + A P+ N P P +PVK+ T
Sbjct: 526 TTMPVPPWQQTIGQPLRVQ-APQPASILNRMPLPTDSEVPVKRLAT 570
>07_01_0026 + 190568-190829,192475-194534,194620-195168
Length = 956
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 332 VKAIADALRLPATIPLAANPSLASNHSPFPVHRT 231
V +AD LR+P A +P+L S+ P+ + T
Sbjct: 111 VSHVADELRIPLVSFAATDPTLGSSQYPYFLRAT 144
>05_07_0329 -
29308867-29308932,29309040-29309159,29309245-29309364,
29309566-29310123,29310199-29310258,29310839-29310904,
29310993-29311103,29311167-29311257,29311349-29311449,
29311534-29311641,29311737-29314205
Length = 1289
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -3
Query: 330 KSHRGCFETSSHDTSRRKSEFSEQP*PL--PSP*NDSRQKVYNTRSAT 193
K +G F D + +EF +QP P+ P P ++ + V N ++T
Sbjct: 252 KKKKGGFTVDDEDVDKILAEFEDQPPPVDDPEPEPEAVKDVGNVAAST 299
>05_06_0057 +
25253497-25253589,25253722-25253799,25254583-25254621,
25254724-25255263,25255352-25255450,25255614-25255691,
25255961-25256146,25256240-25256365
Length = 412
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -1
Query: 320 ADALRLPATIPLAANPSLASNHSPFPVHRTIPVKKFTTQEAQ 195
A +L LPA ++ANP ++ +P+H+ P TTQ +Q
Sbjct: 126 ASSLDLPA---MSANPQQSAQAKGYPIHQMPPTS--TTQTSQ 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,627,851
Number of Sequences: 37544
Number of extensions: 212329
Number of successful extensions: 716
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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