Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G11
         (275 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    25   2.6  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    24   3.5  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    24   3.5  
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy...    24   4.6  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    23   6.1  

>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 135 STKRTLSSIPLLQTKAGPRDKELWVNRLKEEYQA 236
           ST+R+    PL    AG RDK   + + ++E  A
Sbjct: 132 STRRSTRDKPLTSAAAGKRDKLTELKKRRQERSA 165


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 262 LLFSTYLIKAWYSS 221
           L F TY IK WY+S
Sbjct: 106 LYFGTYRIKPWYTS 119


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 31  WHED*YTNVKRVRL*FSLYNYD 96
           W +D  TN+ R  + + +YNYD
Sbjct: 821 WGKDPKTNLSRRYINYKVYNYD 842


>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 130 STIFNKLLFKLYHNYIKKIT 71
           S + +KLL  L H+YI+K T
Sbjct: 308 SQVLDKLLITLDHDYIEKST 327


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 103  KLYHNYIKKITNVHVLHLCINP 38
            K     +K   +VHV++LC +P
Sbjct: 2111 KAVEKILKSYPDVHVIYLCCDP 2132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,066,665
Number of Sequences: 5004
Number of extensions: 16670
Number of successful extensions: 44
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)