Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G11
         (275 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_03_0018 + 7118104-7118436,7118543-7118767                           64   2e-11
01_06_0503 + 29864421-29864550,29865143-29865215,29865486-298655...    28   0.93 
05_04_0036 + 17386160-17386318,17386588-17386651,17387089-173871...    27   2.1  
03_05_0882 + 28467691-28467730,28468386-28468675,28469262-284694...    25   6.5  
05_06_0071 + 25355853-25356095,25356183-25356239,25356848-253570...    25   8.7  
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    25   8.7  
02_03_0118 - 15451031-15451123,15451744-15451831,15451914-154519...    25   8.7  

>10_03_0018 + 7118104-7118436,7118543-7118767
          Length = 185

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 29/49 (59%), Positives = 33/49 (67%)
 Frame = +3

Query: 129 DASTKRTLSSIPLLQTKAGPRDKELWVNRLKEEYQALIKYVENNKAADN 275
           D  TK  +  IPLL T+AGPRD E W  RLKEEY+ALI Y   NK+ DN
Sbjct: 5   DKGTKSVVGEIPLLSTRAGPRDGEAWRQRLKEEYRALIAYTSVNKSKDN 53


>01_06_0503 +
           29864421-29864550,29865143-29865215,29865486-29865537,
           29866496-29866506,29866793-29866819,29866892-29866910
          Length = 103

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -2

Query: 160 ILLNVRLVLASTIFNKLLFKLYHNYIKKITNVHVLHLCI 44
           +LL  +++L  TI + +   + H+YI  +  +H  H C+
Sbjct: 45  LLLPDKILLVVTIVHIVASSVAHSYINLVIEIHFNHQCV 83


>05_04_0036 +
           17386160-17386318,17386588-17386651,17387089-17387147,
           17387268-17387343,17387521-17387592,17387786-17387873,
           17387992-17388250,17388446-17388561,17388876-17389096,
           17389196-17389224,17389285-17389420,17389567-17389651,
           17389735-17389963
          Length = 530

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 174 TKAGPRDKELWVNRLKEEYQALIKYVENNKAADN 275
           T   PR  EL +  L+E+Y  L+ Y++ N +  N
Sbjct: 398 TSLDPRGLELALEYLQEKYGNLLFYIQENGSGSN 431


>03_05_0882 +
           28467691-28467730,28468386-28468675,28469262-28469411,
           28470126-28470214,28470331-28470440,28470545-28470639,
           28471110-28471162,28471374-28471539,28471909-28472001,
           28472304-28472432,28472549-28472668,28472862-28472942,
           28473495-28473602,28473895-28474038,28474120-28474218,
           28474300-28474379,28474830-28474922,28475197-28475320
          Length = 687

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 189 RDKELWVNRLKEEYQALIKYVENNKAADN 275
           R+ E  + RLKE+Y+ L+  +E  K ADN
Sbjct: 504 RETEEELRRLKEKYEMLVVELEKTK-ADN 531


>05_06_0071 +
           25355853-25356095,25356183-25356239,25356848-25357069,
           25357143-25357227,25357993-25358083,25358172-25358336,
           25358583-25358699,25358773-25358848,25359940-25360102,
           25360184-25361064
          Length = 699

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -2

Query: 103 KLYHNYIKKITNVHVLHLCINPRANSS 23
           ++  +    + N  V H+C NPR+ +S
Sbjct: 266 RILSSVASSLENKSVFHICFNPRSGAS 292


>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/52 (23%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 120 KMVDASTKRTLSSIPLLQTKAGPRDKELWVNRLKEEYQAL-IKYVENNKAAD 272
           K VDA   + +  +P L++  G R+    +++  +EY+    KY  +++ ++
Sbjct: 182 KAVDAELIKAIEVVPDLKSYLGARNSRWPISQQNKEYEVYRFKYANDSEESN 233


>02_03_0118 -
           15451031-15451123,15451744-15451831,15451914-15451985,
           15452896-15453018,15453541-15453629
          Length = 154

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = -2

Query: 115 KLLFKLYHNYIKKITNVHVLHL--CINP 38
           KL +KL+++YI+K++     HL  C+ P
Sbjct: 85  KLTYKLHYSYIEKLSMYTWSHLFWCLGP 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,577,264
Number of Sequences: 37544
Number of extensions: 92553
Number of successful extensions: 198
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)