Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G11
         (275 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19154-5|CAA79557.1|  162|Caenorhabditis elegans Hypothetical pr...    66   4e-12
U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical pr...    29   0.47 
Z81536-9|CAB04362.1|  733|Caenorhabditis elegans Hypothetical pr...    27   2.5  
Z74030-13|CAA98445.2|  336|Caenorhabditis elegans Hypothetical p...    27   2.5  
L16560-5|AAA27996.1|  443|Caenorhabditis elegans Hypothetical pr...    26   4.4  
AF022984-1|AAB69953.1|  540|Caenorhabditis elegans Hypothetical ...    26   4.4  
AF016686-15|AAB66231.3|  572|Caenorhabditis elegans C-type lecti...    26   4.4  
Z93383-9|CAB07630.1|  281|Caenorhabditis elegans Hypothetical pr...    25   5.8  
AF036693-1|AAK29785.1|  391|Caenorhabditis elegans Hypothetical ...    25   7.7  

>Z19154-5|CAA79557.1|  162|Caenorhabditis elegans Hypothetical
           protein C40H1.6 protein.
          Length = 162

 Score = 65.7 bits (153), Expect = 4e-12
 Identities = 28/49 (57%), Positives = 38/49 (77%)
 Frame = +3

Query: 126 VDASTKRTLSSIPLLQTKAGPRDKELWVNRLKEEYQALIKYVENNKAAD 272
           +D +TK +L +IPL +TKA PRD +LW+ RLKEEY+A+I  V+NNK  D
Sbjct: 1   MDDATKSSLKAIPLCKTKASPRDGDLWIERLKEEYEAIIAAVQNNKDCD 49


>U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical
           protein R07E4.5 protein.
          Length = 817

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 151 NVRLVLASTIFNKLLFKLYHNYIKKIT 71
           N    + STI N+ + K++H Y KK+T
Sbjct: 103 NALFFIVSTIVNEKILKMFHKYHKKMT 129


>Z81536-9|CAB04362.1|  733|Caenorhabditis elegans Hypothetical
           protein F40D4.12 protein.
          Length = 733

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 127 TIFNKLLFKLYHNYIKKITNVHVLHLCINPRA 32
           ++F K+  KL    +  I  V  LH+C N RA
Sbjct: 122 SMFKKINSKLVSLAVDNINQVRELHVCFNSRA 153


>Z74030-13|CAA98445.2|  336|Caenorhabditis elegans Hypothetical
           protein D1054.12 protein.
          Length = 336

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -2

Query: 247 YLIKA-WYSSFNLLTHNSLSLGPAFV*SSGILLNVRLVLASTIFNKLLFKLYHNYIKKIT 71
           Y++ A W++ +N    N    G A     GIL  + ++   T + +  F+++H   K+  
Sbjct: 260 YIVLAIWFNYYNQAATNFALFGIAL---HGILSTLTMLFVHTPYREATFQIFHVSTKRTA 316

Query: 70  N 68
           N
Sbjct: 317 N 317


>L16560-5|AAA27996.1|  443|Caenorhabditis elegans Hypothetical
           protein D2007.5 protein.
          Length = 443

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 138 TKRTLSSIPLLQTKAGPRDKELWVNRLKEEYQA 236
           TK+  SS  L   K+ P DKE  + ++ E ++A
Sbjct: 311 TKKNSSSTCLNSPKSTPEDKEPTIEKVAESFRA 343


>AF022984-1|AAB69953.1|  540|Caenorhabditis elegans Hypothetical
           protein ZK488.6 protein.
          Length = 540

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 256 FSTYLIKAWYSSFNLLTHNSLSLGPAFV*SSGILLNV 146
           F   L K W S F  L H   S G AFV    I++ +
Sbjct: 127 FHKKLSKKWKSDFKYLYHTLPSAGAAFVHEDQIVVTL 163


>AF016686-15|AAB66231.3|  572|Caenorhabditis elegans C-type lectin
           protein 43 protein.
          Length = 572

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 155 QYPTASNKSWTEG 193
           QYP+AS+ SWT+G
Sbjct: 258 QYPSASSCSWTDG 270


>Z93383-9|CAB07630.1|  281|Caenorhabditis elegans Hypothetical
           protein F54B8.10 protein.
          Length = 281

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
 Frame = -2

Query: 148 VRLVLASTI-FNKLLFK----LYHNYIKKITNVHVLHL 50
           VR  LA  I F+K+L      L+HN+ +KI N H+L L
Sbjct: 94  VRATLAFLISFDKVLASIFPILHHNHRRKIRNSHILLL 131


>AF036693-1|AAK29785.1|  391|Caenorhabditis elegans Hypothetical
           protein C49A9.7 protein.
          Length = 391

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 163 GILLNVRLVLAST-IFNKLLFKLYHNYIKKITNVHVLHLCI 44
           GIL  + + LA    F  +   LYH  ++ +TN ++ +L +
Sbjct: 65  GILFTLTIFLALMGNFTVMWIILYHRQMRSVTNYYLFNLAV 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,861,383
Number of Sequences: 27780
Number of extensions: 88739
Number of successful extensions: 203
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 238114316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)