Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G10
         (165 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390...    71   1e-13
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493...    69   4e-13
01_05_0293 - 20532559-20532572,20532573-20532798,20532926-205339...    27   2.0  
11_05_0037 - 18518414-18519078,18519203-18519254                       26   4.7  
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820...    26   4.7  
01_05_0816 + 25462571-25462630,25462752-25462838,25462929-254629...    26   4.7  
07_01_0414 + 3157096-3157674                                           25   8.3  
02_02_0151 - 7220335-7220819,7220933-7223507                           25   8.3  

>03_05_0228 -
           22137771-22138016,22138109-22138306,22138852-22139018,
           22139129-22139132
          Length = 204

 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 30/48 (62%), Positives = 38/48 (79%)
 Frame = +3

Query: 21  MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKA 164
           MGAY+Y+ EL+R+K SDVMRF+ R+R W+YRQ   + R  RPTRPDKA
Sbjct: 1   MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKA 48


>05_03_0257 +
           11145558-11145876,11148181-11148347,11149114-11149311,
           11149405-11149650
          Length = 309

 Score = 69.3 bits (162), Expect = 4e-13
 Identities = 29/47 (61%), Positives = 37/47 (78%)
 Frame = +3

Query: 24  GAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKA 164
           GAY+Y+ EL+R+K SDVMRF+ R+R W+YRQ   + R  RPTRPDKA
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKA 153


>01_05_0293 -
           20532559-20532572,20532573-20532798,20532926-20533960,
           20534670-20534996
          Length = 533

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 114 QLTRMHRAPRPTRPD 158
           QLTR+H  P P RPD
Sbjct: 73  QLTRLHPPPEPPRPD 87


>11_05_0037 - 18518414-18519078,18519203-18519254
          Length = 238

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 3  YHRLVKMGAYRYIQELYRKKLSDVMR 80
          YH  V+MG  RY+  LYR ++ D+++
Sbjct: 5  YHP-VQMGYKRYLPGLYRYRVGDILQ 29


>01_06_1201 -
           35380338-35380496,35381200-35381322,35381521-35382066,
           35382285-35382392,35382695-35383225,35383614-35383743,
           35384225-35385081,35385303-35385408,35387119-35387230,
           35389255-35389347,35389723-35389771,35389859-35389897,
           35390671-35390757,35391613-35391873,35391957-35392166,
           35392413-35393507
          Length = 1501

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 59  KVERCYAISLAYKSVAISPVDSYAPR 136
           + E+C A+  AY+++A    DS  PR
Sbjct: 25  RYEKCVALLAAYQTLAFPGFDSQTPR 50


>01_05_0816 +
           25462571-25462630,25462752-25462838,25462929-25462961,
           25462962-25463030,25463146-25463339,25463632-25463773,
           25464126-25464165,25464428-25464594,25465114-25465116,
           25465371-25465499,25465811-25465888,25465974-25465979
          Length = 335

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 65  ERCYAISLAYKSVAISPVD 121
           ERCYA+SL+Y  + +   D
Sbjct: 165 ERCYALSLSYPLMVVGTAD 183


>07_01_0414 + 3157096-3157674
          Length = 192

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 56  EKVERCYAISLAYKSVAISPVDSYAPRSQAHEA 154
           + VERC+ ++   K    +  D YAP  +A +A
Sbjct: 90  DMVERCFEVTANLKRCMDAHADYYAPVLRAEQA 122


>02_02_0151 - 7220335-7220819,7220933-7223507
          Length = 1019

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 159 CLASWAWERGAYESTGDI 106
           CLA WAW R  Y++ G++
Sbjct: 896 CLAEWAWRR--YKAGGEL 911


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,939,519
Number of Sequences: 37544
Number of extensions: 74424
Number of successful extensions: 184
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 14,793,348
effective HSP length: 35
effective length of database: 13,479,308
effective search space used: 256106852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)