Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G10
         (165 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...    82   4e-17
Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    27   1.8  
U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z81543-1|CAB04423.2|  543|Caenorhabditis elegans Hypothetical pr...    25   5.5  
AL021447-4|CAB60285.3|  330|Caenorhabditis elegans Hypothetical ...    25   7.2  
Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z68216-2|CAA92460.2|  367|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score = 82.2 bits (194), Expect = 4e-17
 Identities = 33/48 (68%), Positives = 42/48 (87%)
 Frame = +3

Query: 21  MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKA 164
           MGAY+Y+QE++RKK SD +R+LLRIR W YRQL+ +HR PRPTRP+KA
Sbjct: 1   MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKA 48


>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 45  ELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPR 143
           EL R  + + +   ++ R W    LTR+HR P+
Sbjct: 264 ELKRAAIGEPLTLAVKGRRWPSMHLTRVHRCPK 296


>U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical
           protein K08D10.5 protein.
          Length = 602

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 45  ELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPR 143
           EL R  + + +   ++ R W    LTR+HR P+
Sbjct: 363 ELKRAAVGEPLTLAVKGRRWSSMHLTRVHRCPK 395


>Z81543-1|CAB04423.2|  543|Caenorhabditis elegans Hypothetical
           protein F49B2.1 protein.
          Length = 543

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = -2

Query: 137 SAVHTSQLAILPHSYTQEKSHNIAQL--FPIQLLYISVRAHLDESVI 3
           +A+H   + ++  S+T E + N+A+   FP+  + +++RA+    VI
Sbjct: 16  AALHMKFIDLIRFSFTCETAKNLAETFNFPVTGIRMAIRANFRLDVI 62


>AL021447-4|CAB60285.3|  330|Caenorhabditis elegans Hypothetical
           protein F19B2.8 protein.
          Length = 330

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -3

Query: 100 TLIRKRNR-ITSLNFFLYNSCIYLYAPILTSL 8
           +LI + N  IT++  FL+  CI +Y+ +LT L
Sbjct: 95  SLIEEGNSDITTIPQFLFIICILIYSQVLTIL 126


>Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical
           protein C49F8.1 protein.
          Length = 407

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = -3

Query: 127 IRVNWRYCHTLIRKRNRITSLNFFLYNSCIYLY 29
           +R+++ Y H     RN  +    F + +C Y++
Sbjct: 86  LRLHFAYIHPYFFSRNNFSPSPLFSFGNCPYIF 118


>Z68216-2|CAA92460.2|  367|Caenorhabditis elegans Hypothetical
           protein F27C8.2 protein.
          Length = 367

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 70  SLNFFLYNSCIYLYAPILTSL 8
           S+NFF++++C  L  P+L  L
Sbjct: 320 SVNFFIFSNCESLMFPLLKKL 340


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,121,524
Number of Sequences: 27780
Number of extensions: 63247
Number of successful extensions: 184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 12,740,198
effective HSP length: 35
effective length of database: 11,767,898
effective search space used: 223590062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)