Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G09
         (339 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    28   0.34 
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    24   7.3  
SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|...    24   7.3  

>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 28.3 bits (60), Expect = 0.34
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 21  HEKESVERALKLDRELRVNGFLVTVNKYRDDDEQKAH 131
           H+ E   R  K     + NGFL+T + YR D+   +H
Sbjct: 117 HQPEEFSRLAK--EGFKKNGFLITADVYRRDEVDSSH 151


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 21  HEKESVERAL-KLDRELRVNGFLVTVNKYRDDD 116
           +E E+++  L  L  + R   FL  VN YR+DD
Sbjct: 121 NEMEALKSPLMSLFEKRRAKKFLEWVNNYREDD 153


>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 21  HEKESVERALKLDRELRVNGFLVTVNKYRDDDE 119
           H KESV+  +  + +L ++G   + N+   DD+
Sbjct: 161 HNKESVQMGMSKEEKLLLSGKKRSANELAIDDQ 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 480,337
Number of Sequences: 5004
Number of extensions: 3661
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)