Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G09
         (339 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0077 + 25645730-25645993,25647172-25647648,25648027-256482...    27   2.8  
04_04_1033 - 30269639-30269734,30269838-30270257,30270450-302706...    27   5.0  
04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916     26   8.7  

>02_05_0077 +
           25645730-25645993,25647172-25647648,25648027-25648237,
           25648407-25648564,25648641-25648711,25648829-25648934,
           25649008-25649094,25649701-25650252,25650337-25650403,
           25650971-25651104,25651175-25651228,25651376-25651472,
           25652007-25652212,25652287-25652367,25652543-25652608,
           25653025-25653098,25653766-25653871
          Length = 936

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = +3

Query: 3   NSARGFHEK-ESVERALKLDRE-LRVNGFLVTVNKYRDD 113
           N+ R F ++ ++++R L  + +  R+NG +  + +Y+DD
Sbjct: 152 NTTRSFEDRIDALQRKLSNETDPQRINGMIAEIKRYQDD 190


>04_04_1033 -
           30269639-30269734,30269838-30270257,30270450-30270662,
           30271071-30271949
          Length = 535

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 42  RALKLDRELRVNGFLVTVNKYRDDDEQKAHAA 137
           + LKLD+E   +G   ++   RDD + + H A
Sbjct: 403 KVLKLDQEAAADGESSSMRPVRDDQDNQLHGA 434


>04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916
          Length = 234

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 1   LIRHEGSTRRNPWRE 45
           LI+HEGS R+  WR+
Sbjct: 128 LIKHEGSRRKASWRD 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,331,456
Number of Sequences: 37544
Number of extensions: 26243
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)