Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G08
         (256 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    26   0.91 
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    24   2.8  
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    24   3.7  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    23   4.9  
SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer...    23   8.5  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    23   8.5  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    23   8.5  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 25.8 bits (54), Expect = 0.91
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 210 NFAIGQDIQTTRDLS 254
           +F IGQDIQ  RDLS
Sbjct: 33  SFGIGQDIQPKRDLS 47


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 203 SLLG*RVYNLLGLNFLHHKW 144
           SL+G   YN  GL++L H+W
Sbjct: 877 SLIG---YNAAGLSYLRHEW 893


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 22  SFGVRNRSRIYSWPLD 69
           SF + N+ R+Y+W L+
Sbjct: 291 SFAIDNKGRVYAWGLN 306


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 8/31 (25%), Positives = 14/31 (45%)
 Frame = -3

Query: 173 LGLNFLHHKWSGRYFFPYXXXXXXXXXLEWI 81
           LGL +L  +W  +YF  +          +W+
Sbjct: 179 LGLAYLIFRWLPKYFIRFVGTREPLATADWL 209


>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 250

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -3

Query: 182 YNLLGLNFLHHKWSGRYFFPY 120
           Y L G     H W+  YF P+
Sbjct: 67  YCLSGQQSAFHLWNAMYFMPF 87


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 187 LYPRREHRTLLLARTSRQPE 246
           L  R EH+TLLL +  + PE
Sbjct: 691 LQERIEHQTLLLRQREKVPE 710


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +2

Query: 74  ELKSIQDGXXXXXXXDREKSSGRSTCGEE 160
           ELKS+ +G       D   S   S C +E
Sbjct: 215 ELKSVNEGSSCCSKKDSSPSEKPSCCSQE 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 889,273
Number of Sequences: 5004
Number of extensions: 11997
Number of successful extensions: 23
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)