Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G08
         (256 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    29   0.60 
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    29   0.60 
AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    29   0.60 
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    29   0.60 
U39849-10|AAA81054.3|  951|Caenorhabditis elegans Glutamate rece...    25   9.8  

>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +3

Query: 189 LSEKRT*NFAIGQDIQTTRDLS 254
           L EKR  NF IGQDIQ  +D++
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVT 156


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +3

Query: 189 LSEKRT*NFAIGQDIQTTRDLS 254
           L EKR  NF IGQDIQ  +D++
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVT 156


>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +3

Query: 189 LSEKRT*NFAIGQDIQTTRDLS 254
           L EKR  NF IGQDIQ  +D++
Sbjct: 32  LFEKRARNFNIGQDIQPKKDVT 53


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +3

Query: 189 LSEKRT*NFAIGQDIQTTRDLS 254
           L EKR  NF IGQDIQ  +D++
Sbjct: 32  LFEKRARNFNIGQDIQPKKDVT 53


>U39849-10|AAA81054.3|  951|Caenorhabditis elegans Glutamate
           receptor family (ampa)protein 4 protein.
          Length = 951

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 124 PIFFLGFFCTILNGF*LSDLTATNRYVTYSEHQNYRL 14
           P    G F  +L G  ++ L A   Y   S H+ +RL
Sbjct: 796 PQNIFGIFYVLLTGLIVAFLLACGEYCIESRHEAFRL 832


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,892,317
Number of Sequences: 27780
Number of extensions: 66329
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 230791218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)