Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G08
         (256 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   2.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   2.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   5.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   5.5  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    19   7.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    19   7.2  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    19   9.6  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    19   9.6  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    19   9.6  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 2.4
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +2

Query: 215 CYWPGHPDNQ 244
           CY+P HP  Q
Sbjct: 388 CYYPYHPSTQ 397


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 2.4
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +2

Query: 215 CYWPGHPDNQ 244
           CY+P HP  Q
Sbjct: 388 CYYPYHPSTQ 397


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.8 bits (39), Expect = 5.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 188 RVYNLLGLNFLHHKWSG 138
           R++NL+ +  L   WSG
Sbjct: 278 RIFNLICMMLLIGHWSG 294


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.8 bits (39), Expect = 5.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 188 RVYNLLGLNFLHHKWSG 138
           R++NL+ +  L   WSG
Sbjct: 246 RIFNLICMMLLIGHWSG 262


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 19.4 bits (38), Expect = 7.2
 Identities = 4/8 (50%), Positives = 8/8 (100%)
 Frame = -2

Query: 252 IDLWLSGC 229
           +D+W++GC
Sbjct: 262 LDVWMAGC 269


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 19.4 bits (38), Expect = 7.2
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 22  SFGVRNRSRIYSW 60
           SFG   R  IY W
Sbjct: 150 SFGYTKRDVIYKW 162


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -2

Query: 252 IDLWLSGC 229
           ID+W+S C
Sbjct: 276 IDVWMSSC 283


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 176 DCKPSIREENIELCYWPGHPDN 241
           DC   I +E   L YW G+  N
Sbjct: 58  DCFVRIPKEQGFLSYWRGNLAN 79


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 176 DCKPSIREENIELCYWPGHPDN 241
           DC   I +E   L YW G+  N
Sbjct: 58  DCFVRIPKEQGFLSYWRGNLAN 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,160
Number of Sequences: 438
Number of extensions: 975
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4511484
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)