Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G07
         (157 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    24   2.4  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    24   3.1  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    23   4.1  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    23   5.4  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    23   5.4  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    23   5.4  
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    23   7.2  
SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein ...    22   9.5  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    22   9.5  

>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 71  IPILETFDR*IKIFVHHG 18
           +PI+E +D  IK ++ HG
Sbjct: 348 VPIIEIYDTSIKFYMKHG 365


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 56  FLILEL*STKLRIGFPQSPPSW-RRTNNSHYVGTI 157
           + ILE+   KL+  F Q PP W     NSH V  +
Sbjct: 417 YAILEV---KLQTQFGQDPPEWVNNLVNSHLVEAV 448


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 134 CSSDAMMAATVGTLS*ALYSIIPILE 57
           CS++A+ +  V  LS A+ +I+P  E
Sbjct: 689 CSNEALRSRVVHVLSRAINTILPFSE 714


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 28  TNIFIYLSNVSNIGIIEYK 84
           TNI  YLSN    G+++Y+
Sbjct: 252 TNISFYLSNFIVNGVLQYR 270


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 83  LYSIIPILETFDR*IKIFVHH 21
           LYS +P+L  FD  ++  V H
Sbjct: 56  LYSWVPVLNRFDAILERIVEH 76


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 25   WTNIFIYLSNVSNIGIIEYK 84
            W +IF+    + N GI+++K
Sbjct: 1245 WRSIFVENGRIENNGILQFK 1264


>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 959

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 41 IKIFVHHGHTFIP 3
          +K F  HGHT +P
Sbjct: 20 LKYFEDHGHTIVP 32


>SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein
           Uhp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 202

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 32  FVHHGHTFIP 3
           FVHHG  F+P
Sbjct: 135 FVHHGMIFVP 144


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 25   WTNIFIYLSNVSN 63
            W N+FIY   +SN
Sbjct: 1426 WNNLFIYYPELSN 1438


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 716,751
Number of Sequences: 5004
Number of extensions: 10305
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 32
effective length of database: 2,202,350
effective search space used: 41844650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)