Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G07
         (157 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040653-11|AAB95030.1|  332|Caenorhabditis elegans F-box b prot...    27   2.4  
U41036-5|AAV28332.1|  475|Caenorhabditis elegans Hypothetical pr...    25   7.3  
AF025461-5|AAB70992.1|  297|Caenorhabditis elegans Hypothetical ...    25   7.3  
Z70284-18|CAJ80830.1|  474|Caenorhabditis elegans Hypothetical p...    25   9.6  
Z70284-17|CAA94277.1|  517|Caenorhabditis elegans Hypothetical p...    25   9.6  

>AF040653-11|AAB95030.1|  332|Caenorhabditis elegans F-box b protein
           protein 46 protein.
          Length = 332

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 25  WTNIFIYLSNVSNIGIIEY 81
           W N F+Y+ N S I ++EY
Sbjct: 109 WLNHFLYIINPSKIDVLEY 127


>U41036-5|AAV28332.1|  475|Caenorhabditis elegans Hypothetical
           protein T14E8.4 protein.
          Length = 475

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 15  VPVMDKYFYLPIKCF*YWNYRVQSL 89
           +PV+DK+ Y+P      WNY+V ++
Sbjct: 311 IPVVDKHTYVP------WNYKVDAV 329


>AF025461-5|AAB70992.1|  297|Caenorhabditis elegans Hypothetical
           protein M01D1.8 protein.
          Length = 297

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 25  WTNIFIYLSNVSNIGIIEYKA 87
           W N F+Y+ NVS I  +E+ A
Sbjct: 108 WFNHFLYVLNVSKIEGLEFSA 128


>Z70284-18|CAJ80830.1|  474|Caenorhabditis elegans Hypothetical
           protein K07F5.4b protein.
          Length = 474

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 83  KLRIGFPQSPPSWRRTNNS 139
           K+R+G P   PSW+  +NS
Sbjct: 89  KIRLGRPLKRPSWQLRHNS 107


>Z70284-17|CAA94277.1|  517|Caenorhabditis elegans Hypothetical
           protein K07F5.4a protein.
          Length = 517

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 83  KLRIGFPQSPPSWRRTNNS 139
           K+R+G P   PSW+  +NS
Sbjct: 132 KIRLGRPLKRPSWQLRHNS 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,032,176
Number of Sequences: 27780
Number of extensions: 58921
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 12,740,198
effective HSP length: 32
effective length of database: 11,851,238
effective search space used: 225173522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)