Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G06
         (272 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    24   4.4  
SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   5.9  
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    23   5.9  
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos...    23   7.8  

>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 146 REFFI*SLTNSSRHHKHILYKGNNPKTP 229
           R++FI      +  + HI Y   NPKTP
Sbjct: 243 RQYFIPKEGTYTFSNMHIRYVSANPKTP 270


>SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 105

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 256 SLKKLFKGLRGFWIISFIKYVFV 188
           S  K+ K  RG+W I  ++Y F+
Sbjct: 14  STLKVNKIERGYWFIQCLRYCFI 36


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 202 KYVFVMT*GIREGLYEEFPPLGDARAGGCCQ 110
           KY+  +   +  G+ +++PPL D R     Q
Sbjct: 375 KYLLALNNLVSAGIVQDYPPLCDIRGSYTAQ 405


>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
           Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -2

Query: 160 YEEFPPLGDARAGGCCQGGCV 98
           YE + P+G    G  C   CV
Sbjct: 66  YENYQPIGLTNLGNTCYMNCV 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 995,854
Number of Sequences: 5004
Number of extensions: 13906
Number of successful extensions: 29
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)