Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G06
         (272 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41011-8|AAA82291.2|  321|Caenorhabditis elegans Collagen protei...    27   2.4  
Z49126-5|CAA88940.3| 1270|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>U41011-8|AAA82291.2|  321|Caenorhabditis elegans Collagen protein
           114 protein.
          Length = 321

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 160 YEEFPPLGDARAGGCCQGGC 101
           Y E PP+ +A  GG C GGC
Sbjct: 102 YSEAPPVIEAAGGGSC-GGC 120


>Z49126-5|CAA88940.3| 1270|Caenorhabditis elegans Hypothetical
           protein DH11.3 protein.
          Length = 1270

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -2

Query: 124 GGCCQGGCVRVSGSIRTSFL---LREILSLVPGESSDQPSCRIH 2
           G C Q G  R+  SIR  FL   LR+  + +   SS   +C+++
Sbjct: 141 GVCIQRGTSRILDSIRKEFLGAVLRQDANWLDKHSSGSITCQLN 184


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 151 FPPLGDARAGGCCQGGC 101
           FP  G    GG C GGC
Sbjct: 22  FPSAGGGGGGGGCGGGC 38


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 151 FPPLGDARAGGCCQGGC 101
           FP  G    GG C GGC
Sbjct: 22  FPSAGGGGGGGGCGGGC 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,466,725
Number of Sequences: 27780
Number of extensions: 78199
Number of successful extensions: 192
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 227290938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)