Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G05
         (331 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0623 - 4676847-4676879,4676953-4677115,4677467-4677620,467...    29   0.67 
06_03_0921 + 25949453-25949986,25950150-25950188,25950380-259504...    27   2.7  
11_06_0252 - 21713955-21714473                                         27   3.6  
01_01_0847 - 6611378-6611554,6612181-6612366,6612547-6612658,661...    26   6.2  

>02_01_0623 -
           4676847-4676879,4676953-4677115,4677467-4677620,
           4678413-4678554,4678641-4678706,4679389-4679922
          Length = 363

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 135 FEFQYKNFDASA*QTLWVTFVRLWDR-FVHFTFK 233
           FE  YK  D    +++W  F +LWD+  V+ +FK
Sbjct: 145 FEDGYKTMDIKFMESVWWVFAQLWDKDLVYKSFK 178


>06_03_0921 +
           25949453-25949986,25950150-25950188,25950380-25950445,
           25950526-25950669,25951416-25951612,25952281-25952443,
           25952760-25952873,25953304-25953401,25953964-25954042,
           25954356-25954514,25954690-25954779,25955790-25955923,
           25956513-25956672,25956826-25956909,25957000-25957167,
           25957321-25957446,25958088-25958225,25958311-25958414,
           25958832-25958895,25959229-25959317,25959393-25959534,
           25959937-25960000,25960085-25960152,25960399-25960521,
           25960604-25960669,25960857-25960962,25961076-25961167,
           25961243-25961344
          Length = 1170

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 129 IVFEFQYKNFDASA*QTLWVTFVRLWDR-FVHFTFKGL 239
           I F+  YK  D +  +++W  F +LW++  V+  FK L
Sbjct: 143 IDFKDDYKTMDINFMESVWWVFSQLWEKDLVYKGFKNL 180


>11_06_0252 - 21713955-21714473
          Length = 172

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 224 EVDKTIPQADKGHPKSLLCAGIEI 153
           E D+ +P+  + HP +LLCA I++
Sbjct: 149 EDDRWLPEVRRLHPTALLCAPIDL 172


>01_01_0847 -
           6611378-6611554,6612181-6612366,6612547-6612658,
           6612748-6612784,6612866-6612905
          Length = 183

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 49  IEFILISFYQFINLMRSIIYLFFAFNSLYSSF 144
           + +++I F +F+  M   +  FFA  +++SSF
Sbjct: 63  VAYLMILFQKFVLRMVLPVLAFFALTAIFSSF 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,130,489
Number of Sequences: 37544
Number of extensions: 135587
Number of successful extensions: 255
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)