Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G05
         (331 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016661-1|AAB66049.2|  514|Caenorhabditis elegans Hypothetical ...    28   1.8  
Z82272-8|CAB05223.1|  337|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z82260-13|CAB05143.1|  337|Caenorhabditis elegans Hypothetical p...    27   4.2  
U80026-2|AAY86280.1|  122|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z68106-5|CAA92129.1|  557|Caenorhabditis elegans Hypothetical pr...    26   5.5  
U00052-2|AAK95881.1|  404|Caenorhabditis elegans Hypothetical pr...    26   5.5  
Z78061-2|CAB01493.1|  474|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z72502-15|CAN86590.1|  540|Caenorhabditis elegans Hypothetical p...    26   7.3  
Z72502-14|CAA96584.2|  536|Caenorhabditis elegans Hypothetical p...    26   7.3  
U23179-6|AAK68205.1|  341|Caenorhabditis elegans Serpentine rece...    26   7.3  
AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ...    26   7.3  
Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AF016415-9|AAW88416.1|  297|Caenorhabditis elegans Serpentine re...    25   9.7  

>AF016661-1|AAB66049.2|  514|Caenorhabditis elegans Hypothetical
           protein F02E11.2 protein.
          Length = 514

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 52  EFILISFYQFINLMRSIIYLFFAFNSLYSSFSTKISMPAH 171
           +F+L+ F +F N    +I+LF  F  LY   +T ++  AH
Sbjct: 248 KFVLLFFSEFQNFSAFLIHLFIIF-PLYCFLATGLAPGAH 286


>Z82272-8|CAB05223.1|  337|Caenorhabditis elegans Hypothetical
           protein F55G11.1 protein.
          Length = 337

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 322 WVPFITIA*M*IFKIYSLCKII*RSHKTRPLN 227
           WVP I +    IF + +LC+I       +PLN
Sbjct: 202 WVPIIAVILTFIFALITLCRISRVGEGEKPLN 233


>Z82260-13|CAB05143.1|  337|Caenorhabditis elegans Hypothetical
           protein F55G11.1 protein.
          Length = 337

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 322 WVPFITIA*M*IFKIYSLCKII*RSHKTRPLN 227
           WVP I +    IF + +LC+I       +PLN
Sbjct: 202 WVPIIAVILTFIFALITLCRISRVGEGEKPLN 233


>U80026-2|AAY86280.1|  122|Caenorhabditis elegans Hypothetical
           protein EGAP9.4 protein.
          Length = 122

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 126 LIVFEFQYKNFDASA*QTLWVTFVRLWDRFVHFTFKGLVL 245
           LI+  F+         +TLW    R W  FV +  K LVL
Sbjct: 20  LIISLFEIDAITLKVNETLWDKHRRCWSLFVQYYVKKLVL 59


>Z68106-5|CAA92129.1|  557|Caenorhabditis elegans Hypothetical
           protein F41E7.6 protein.
          Length = 557

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 329 GHLGAVYNYCINVNF*NLFSLQNYLK 252
           GH+  +   C N  F N+F +QN LK
Sbjct: 185 GHVWKLETTCENSKFLNIFEIQNALK 210


>U00052-2|AAK95881.1|  404|Caenorhabditis elegans Hypothetical
           protein K02F3.6 protein.
          Length = 404

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 28  LVPFMYRIEFILISFYQFINLMRSIIYLFFA 120
           L  F+YRI   L+ FY F+    +I++L FA
Sbjct: 67  LTMFLYRILVRLLQFYYFVK-FSAILFLGFA 96


>Z78061-2|CAB01493.1|  474|Caenorhabditis elegans Hypothetical
           protein C48G7.2 protein.
          Length = 474

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 314 VYNYCINVNF*NLFSL 267
           + +YC+N N+ NLFSL
Sbjct: 399 IEHYCVNENYYNLFSL 414


>Z72502-15|CAN86590.1|  540|Caenorhabditis elegans Hypothetical
           protein C08B6.1b protein.
          Length = 540

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 37  FMYRIEFILISFYQFINLMRSIIYLFFAFNSLYSSFSTKIS 159
           F Y I FIL S   + N  + +++   AF + +S+F  KIS
Sbjct: 3   FQYYIIFILFSIIDYSNSYKVLVF-NPAFGASHSNFLGKIS 42


>Z72502-14|CAA96584.2|  536|Caenorhabditis elegans Hypothetical
           protein C08B6.1a protein.
          Length = 536

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 37  FMYRIEFILISFYQFINLMRSIIYLFFAFNSLYSSFSTKIS 159
           F Y I FIL S   + N  + +++   AF + +S+F  KIS
Sbjct: 3   FQYYIIFILFSIIDYSNSYKVLVF-NPAFGASHSNFLGKIS 42


>U23179-6|AAK68205.1|  341|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 1 protein.
          Length = 341

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 31  VPFMYRIEFILISFYQFINLMRSIIYLFFAFNSLYSSFST 150
           +PF   I+F+LIS++    L   ++ L F ++ L   F T
Sbjct: 48  LPFHGNIKFMLISYFLSAFLFAVVLALTFGYHILVPLFIT 87


>AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical
           protein Y20F4.4 protein.
          Length = 1319

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 122 LTHCIRVSVQKFRCQRITDSLGDLCPLVGSFCPLHI 229
           ++H    +   F+C+ I +  GD C  VG+    HI
Sbjct: 9   ISHGYEQNKNFFKCRFIKNRRGDECDFVGTLSDTHI 44


>Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical
           protein F10F2.2 protein.
          Length = 1343

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 330 RAFGCRL*LLHKCEFLKSILFA 265
           R+FG RL    +CE+LK I+F+
Sbjct: 398 RSFGQRLENGERCEYLKPIMFS 419


>AF016415-9|AAW88416.1|  297|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 36 protein.
          Length = 297

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 100 IIYLFFAFN---SLYSSFSTKISMPAHNRLFG*PLSACGIVLSTSHLKVLFCVI 252
           +I +FF  +   +L+   S  + +P+  R+FG  ++ C     T H  V+F +I
Sbjct: 131 LIAIFFGLSEELTLFGFCSYDMEIPSTCRVFGCAMNKCFYNFWTIHRSVIFSLI 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,653,785
Number of Sequences: 27780
Number of extensions: 144057
Number of successful extensions: 368
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)