Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G04
         (161 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    23   5.4  
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual     23   5.4  
SPBC409.20c |psh3||ER chaperone SHR3 homologue Psh3|Schizosaccha...    23   7.2  
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    23   7.2  
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    23   7.2  
SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pom...    22   9.5  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    22   9.5  

>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 63  YIHWIIQYRIFNTKQRIVS 7
           Y+ WI + RI NT++ +V+
Sbjct: 291 YMEWIHKKRIINTQELLVT 309


>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 121 YHIQGKYLKY 150
           +H+QGKYL Y
Sbjct: 150 FHVQGKYLPY 159


>SPBC409.20c |psh3||ER chaperone SHR3 homologue
           Psh3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 1   ARGDDSLFSIKDSILNNPVNIFYVYNLVCIQIV 99
           A+GDD LF    ++L     I ++ N+    +V
Sbjct: 93  AKGDDKLFFYSSTLLYLTALILFIVNVAPSMLV 125


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 132 LNVVISSDT*IYDLDTN*IIHVKYIHWIIQY 40
           L  V SS +   ++    + +V+YI W+I +
Sbjct: 80  LKNVFSSASFFREVSVRMVYYVRYIQWLINF 110


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 37  SILNNPVNIFYVYNLVCIQIVYLGIRRDYHIQGKY 141
           S+ +  V +FY  N  CI I +L   + +   G Y
Sbjct: 11  SLHSELVILFYAKNRFCISIDHLRPLKSHRTHGHY 45


>SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 158

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 121 NLVGYLNIRSGYKLN 77
           N +GY NI  GY+LN
Sbjct: 27  NNLGYQNIPYGYQLN 41


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 19  LFSIKDSILNNPVNIFYVYNLVCIQIV 99
           LFSI DS+  +P+   + ++  C  I+
Sbjct: 505 LFSILDSLWFHPLYFMFGFSFFCFGIL 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 636,298
Number of Sequences: 5004
Number of extensions: 9320
Number of successful extensions: 25
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 34
effective length of database: 2,192,342
effective search space used: 41654498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)