Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G04
         (161 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0590 + 26457514-26457801,26458849-26459325,26459817-264600...    27   2.1  
01_01_0010 - 62670-62783,62877-63020,63339-63431,63665-63779,639...    26   4.7  
01_01_0464 - 3431298-3431315,3431586-3433339,3433340-3433589,343...    25   6.3  
07_03_0859 + 22054087-22055421                                         25   8.3  

>04_04_0590 +
           26457514-26457801,26458849-26459325,26459817-26460027,
           26460219-26460376,26460461-26460531,26460707-26460812,
           26460880-26460966,26461591-26462148,26462245-26462308,
           26463352-26463485,26463568-26463621,26464321-26464417,
           26465620-26465825,26465901-26465984,26466265-26466330,
           26466883-26466956,26467664-26467751,26467830-26467928
          Length = 973

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 87  YPDRIFRYPTRLPHSRE 137
           Y  RI RYP++LPHS +
Sbjct: 642 YNRRIHRYPSQLPHSED 658


>01_01_0010 -
           62670-62783,62877-63020,63339-63431,63665-63779,
           63902-64152,64248-64431,64694-64950
          Length = 385

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 7   GDDSLFSIKDSILNNPVNIFYVYNLVC 87
           G  S +SI D I + P   +Y+ +++C
Sbjct: 133 GPASSYSILDCIFHEPDETYYIIDMIC 159


>01_01_0464 -
           3431298-3431315,3431586-3433339,3433340-3433589,
           3433716-3434041,3434297-3434618
          Length = 889

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 160 NFYNISNTSLECGNLVGYLNIRSGYKLNYTR 68
           NF N+S   L   NLVG + + S + L + R
Sbjct: 325 NFTNLSTLFLNSNNLVGTMKLASLWGLQHLR 355


>07_03_0859 + 22054087-22055421
          Length = 444

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 1   ARGDDSLFSIKDSILNNPVNIFYV 72
           ARG   +F++ D IL++  ++FYV
Sbjct: 333 ARGGIGMFAMVDEILDSTFDMFYV 356


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,448,771
Number of Sequences: 37544
Number of extensions: 43014
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 14,793,348
effective HSP length: 34
effective length of database: 13,516,852
effective search space used: 256820188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)