Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G04
         (161 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106575-8|AAC78169.1|  395|Caenorhabditis elegans Hypothetical ...    26   4.1  
U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical pr...    25   5.5  
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr...    25   5.5  

>AF106575-8|AAC78169.1|  395|Caenorhabditis elegans Hypothetical
           protein K04F1.10 protein.
          Length = 395

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
 Frame = -2

Query: 154 YNISNTSLECGNLVGYLNIRSG-----YKLNYTRKIY 59
           +NI+N   +C  +VG + I SG     +KLN  + IY
Sbjct: 213 FNITNMEPDCVRIVGQVRIDSGDEEHVHKLNLLKFIY 249


>U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical
           protein R07E4.1b protein.
          Length = 986

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 160 NFYNISNTSLECGNLVGYLNIRS 92
           NFY  S   L+ G  VGYL + S
Sbjct: 493 NFYEASQIQLQRGLYVGYLKLHS 515


>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
           protein R07E4.1a protein.
          Length = 1122

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 160 NFYNISNTSLECGNLVGYLNIRS 92
           NFY  S   L+ G  VGYL + S
Sbjct: 629 NFYEASQIQLQRGLYVGYLKLHS 651


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,282,928
Number of Sequences: 27780
Number of extensions: 45677
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 12,740,198
effective HSP length: 34
effective length of database: 11,795,678
effective search space used: 224117882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)