Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G03
         (204 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    28   0.79 
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    28   0.79 

>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 49   LQPTLNYTFISSNPI*YICI*NNLSQFTVK 138
            LQP +     S+NP  ++C+ NN + FT K
Sbjct: 1742 LQPVIKNNPCSTNPCSHLCLLNNKNTFTCK 1771


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 49   LQPTLNYTFISSNPI*YICI*NNLSQFTVK 138
            LQP +     S+NP  ++C+ NN + FT K
Sbjct: 1742 LQPVIKNNPCSTNPCSHLCLLNNKNTFTCK 1771


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,209,364
Number of Sequences: 27780
Number of extensions: 60981
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 12,740,198
effective HSP length: 47
effective length of database: 11,434,538
effective search space used: 228690760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)